miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10539 3' -59.6 NC_002687.1 + 11414 0.66 0.883627
Target:  5'- cGGGCGUUGuGUGUggUGCGGcgcaagacuugguGCugGGUGAg -3'
miRNA:   3'- -UUCGCAAC-CGCG--ACGCC-------------CGugCCAUU- -5'
10539 3' -59.6 NC_002687.1 + 224086 0.66 0.863553
Target:  5'- uGGUGgUGGUGCUGgcggacguuCGGGaCGCGGUGg -3'
miRNA:   3'- uUCGCaACCGCGAC---------GCCC-GUGCCAUu -5'
10539 3' -59.6 NC_002687.1 + 208521 0.66 0.863553
Target:  5'- --cCGUUGuuGCUGuCGGGCACGGc-- -3'
miRNA:   3'- uucGCAACcgCGAC-GCCCGUGCCauu -5'
10539 3' -59.6 NC_002687.1 + 280127 0.67 0.817126
Target:  5'- uAGCcUUGcGUGCUGCGGGCugGuugcGUAAu -3'
miRNA:   3'- uUCGcAAC-CGCGACGCCCGugC----CAUU- -5'
10539 3' -59.6 NC_002687.1 + 160920 0.67 0.80036
Target:  5'- uAAG-GUUGGgGCUGgGGGC-UGGUGGa -3'
miRNA:   3'- -UUCgCAACCgCGACgCCCGuGCCAUU- -5'
10539 3' -59.6 NC_002687.1 + 173612 0.68 0.783041
Target:  5'- gAGGCGgaGGCGgagGCGGGgGCGGa-- -3'
miRNA:   3'- -UUCGCaaCCGCga-CGCCCgUGCCauu -5'
10539 3' -59.6 NC_002687.1 + 173588 0.68 0.783041
Target:  5'- gAGGCGgaGGCGgagGCGGGgGCGGa-- -3'
miRNA:   3'- -UUCGCaaCCGCga-CGCCCgUGCCauu -5'
10539 3' -59.6 NC_002687.1 + 132921 0.69 0.718967
Target:  5'- gAGGcCGUUGGCGCUGCaGGCAUu---- -3'
miRNA:   3'- -UUC-GCAACCGCGACGcCCGUGccauu -5'
10539 3' -59.6 NC_002687.1 + 307637 0.69 0.699933
Target:  5'- uGGCGguggUGGUGCUGgcaCGGGCggcgGCGGUGc -3'
miRNA:   3'- uUCGCa---ACCGCGAC---GCCCG----UGCCAUu -5'
10539 3' -59.6 NC_002687.1 + 224125 0.69 0.699933
Target:  5'- uGGCGcUGGCGCUgGCGGugGCGGUGg -3'
miRNA:   3'- uUCGCaACCGCGA-CGCCcgUGCCAUu -5'
10539 3' -59.6 NC_002687.1 + 224155 0.69 0.699933
Target:  5'- uGGCGcUGGCGCUgGCGGugGCGGUGg -3'
miRNA:   3'- uUCGCaACCGCGA-CGCCcgUGCCAUu -5'
10539 3' -59.6 NC_002687.1 + 292791 0.71 0.622335
Target:  5'- gAAGCGgUGGCgGCcGCGGcGCACGGg-- -3'
miRNA:   3'- -UUCGCaACCG-CGaCGCC-CGUGCCauu -5'
10539 3' -59.6 NC_002687.1 + 205442 0.72 0.535637
Target:  5'- uGGCGgugucgUGGgacaCGCUGUGGGCACGGa-- -3'
miRNA:   3'- uUCGCa-----ACC----GCGACGCCCGUGCCauu -5'
10539 3' -59.6 NC_002687.1 + 154535 0.77 0.292731
Target:  5'- gAAGCGUUGGCGCguugGUGGcCAUGGUGAc -3'
miRNA:   3'- -UUCGCAACCGCGa---CGCCcGUGCCAUU- -5'
10539 3' -59.6 NC_002687.1 + 217428 1.03 0.005828
Target:  5'- cAAGCGUUGGCGCUGCGGGCACGGUAAc -3'
miRNA:   3'- -UUCGCAACCGCGACGCCCGUGCCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.