miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10546 3' -50.6 NC_002687.1 + 64053 0.66 0.999698
Target:  5'- aGCCGUGCUGCCgucuaUGUccUUACGAUu-- -3'
miRNA:   3'- gUGGCACGAUGG-----ACGu-AGUGCUAuuu -5'
10546 3' -50.6 NC_002687.1 + 51983 0.66 0.999698
Target:  5'- aUAUCGUGUUACgUUGCAgCACGAUu-- -3'
miRNA:   3'- -GUGGCACGAUG-GACGUaGUGCUAuuu -5'
10546 3' -50.6 NC_002687.1 + 214985 0.66 0.999622
Target:  5'- aCACCG-GCgggGCCgaggGCGgcgacaucgUCACGAUGAc -3'
miRNA:   3'- -GUGGCaCGa--UGGa---CGU---------AGUGCUAUUu -5'
10546 3' -50.6 NC_002687.1 + 20808 0.66 0.999622
Target:  5'- aCACCuUGCUGCCgguaagggGCAcaaCACGGUGGu -3'
miRNA:   3'- -GUGGcACGAUGGa-------CGUa--GUGCUAUUu -5'
10546 3' -50.6 NC_002687.1 + 118258 0.66 0.999531
Target:  5'- gACgGUGCcgcGCCUGCGUCgaACGAg--- -3'
miRNA:   3'- gUGgCACGa--UGGACGUAG--UGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 118168 0.66 0.999531
Target:  5'- gACgGUGCcgcGCCUGCGUCgaACGAg--- -3'
miRNA:   3'- gUGgCACGa--UGGACGUAG--UGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 118198 0.66 0.999531
Target:  5'- gACgGUGCagcGCCUGCGUCgaACGAg--- -3'
miRNA:   3'- gUGgCACGa--UGGACGUAG--UGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 118228 0.66 0.999531
Target:  5'- gACgGUGCagcGCCUGCGUCgaACGAg--- -3'
miRNA:   3'- gUGgCACGa--UGGACGUAG--UGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 63928 0.66 0.999289
Target:  5'- aACC-UGUUG-CUGCGUCACGGUGc- -3'
miRNA:   3'- gUGGcACGAUgGACGUAGUGCUAUuu -5'
10546 3' -50.6 NC_002687.1 + 128194 0.66 0.999289
Target:  5'- aCGCCGUGgugUACaugGCGUCACGAg--- -3'
miRNA:   3'- -GUGGCACg--AUGga-CGUAGUGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 104089 0.66 0.999289
Target:  5'- -uCCGUGCUGCCUccGCAgaUgGCGAg--- -3'
miRNA:   3'- guGGCACGAUGGA--CGU--AgUGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 297807 0.66 0.999289
Target:  5'- aCGCU-UGCgcugACCuugUGCGUCGCGAUGAGc -3'
miRNA:   3'- -GUGGcACGa---UGG---ACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 227549 0.68 0.99578
Target:  5'- gGCCGaGCUucCCUGCAUgcaauagCACGGUGAAu -3'
miRNA:   3'- gUGGCaCGAu-GGACGUA-------GUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 135263 0.69 0.994402
Target:  5'- aACCGcUGC-ACC-GCGUCGCGGUAc- -3'
miRNA:   3'- gUGGC-ACGaUGGaCGUAGUGCUAUuu -5'
10546 3' -50.6 NC_002687.1 + 106203 0.69 0.994402
Target:  5'- cCGCCGUGU--UCUGUAUCAUGAa--- -3'
miRNA:   3'- -GUGGCACGauGGACGUAGUGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 91046 0.69 0.99151
Target:  5'- aCACCG-GCUGCCgUGCAaaguggucgacgUCGCGAg--- -3'
miRNA:   3'- -GUGGCaCGAUGG-ACGU------------AGUGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 51313 0.7 0.989001
Target:  5'- aAUCGUGCUACgUUGCAgCACGAUu-- -3'
miRNA:   3'- gUGGCACGAUG-GACGUaGUGCUAuuu -5'
10546 3' -50.6 NC_002687.1 + 25368 0.71 0.975509
Target:  5'- uCAaaGUGUggccGCCUGCGUCACGAUc-- -3'
miRNA:   3'- -GUggCACGa---UGGACGUAGUGCUAuuu -5'
10546 3' -50.6 NC_002687.1 + 261912 0.72 0.963758
Target:  5'- aACgGUGCUGCCaaUGUGUCGCGAg--- -3'
miRNA:   3'- gUGgCACGAUGG--ACGUAGUGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 81156 0.73 0.944165
Target:  5'- uGCCGUGCauUACCUGCGccCGCGAa--- -3'
miRNA:   3'- gUGGCACG--AUGGACGUa-GUGCUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.