miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10546 5' -46.9 NC_002687.1 + 230253 1.13 0.027886
Target:  5'- aCGUCGCAACACGAUUUAGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 230373 1.13 0.027886
Target:  5'- aCGUCGCAACACGAUUUAGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 231104 1.13 0.027886
Target:  5'- aCGUCGCAACACGAUUUAGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229889 1.13 0.027886
Target:  5'- aCGUCGCAACACGAUUUAGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229647 1.13 0.027886
Target:  5'- aCGUCGCAACACGAUUUAGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 230616 1.12 0.030314
Target:  5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 230133 1.12 0.030314
Target:  5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 230738 1.12 0.030314
Target:  5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 230982 1.12 0.030314
Target:  5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 230860 1.12 0.030314
Target:  5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 230495 1.12 0.030314
Target:  5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229767 1.12 0.030314
Target:  5'- aCGUCGCAACACGAUUUGGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229404 1.05 0.077294
Target:  5'- aCGUCGCAACACGAcUUAGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUaAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229526 1.03 0.101211
Target:  5'- aCGUCGCAACACGA-UUAGUGUGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUaAAUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 228303 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229468 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229533 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229403 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229598 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 228238 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.