miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10546 5' -46.9 NC_002687.1 + 3474 0.7 0.999679
Target:  5'- uCGaCGCGGCGCuGUagAGUGUGCUGa -3'
miRNA:   3'- -GCaGCGUUGUGcUAaaUCACACGAUg -5'
10546 5' -46.9 NC_002687.1 + 11722 0.68 0.999983
Target:  5'- uGUCGUGACAUGugucuGUGUGCa-- -3'
miRNA:   3'- gCAGCGUUGUGCuaaauCACACGaug -5'
10546 5' -46.9 NC_002687.1 + 21594 0.66 1
Target:  5'- cCGcUCGCAGCACaGAUg-AGUG-GCUGg -3'
miRNA:   3'- -GC-AGCGUUGUG-CUAaaUCACaCGAUg -5'
10546 5' -46.9 NC_002687.1 + 23851 0.68 0.999991
Target:  5'- uGUCGC-GCA-GAUaUGGUGUGCUc- -3'
miRNA:   3'- gCAGCGuUGUgCUAaAUCACACGAug -5'
10546 5' -46.9 NC_002687.1 + 29062 0.67 0.999997
Target:  5'- uGUCGCAuACACGGggaUGGUGgccuuggagucgaucGCUGCc -3'
miRNA:   3'- gCAGCGU-UGUGCUaa-AUCACa--------------CGAUG- -5'
10546 5' -46.9 NC_002687.1 + 30483 0.66 1
Target:  5'- uCGagGCGAUugGAgacgGGUGUGCc-- -3'
miRNA:   3'- -GCagCGUUGugCUaaa-UCACACGaug -5'
10546 5' -46.9 NC_002687.1 + 50031 0.97 0.220462
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUGCu -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 50917 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 50982 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51047 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51112 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACg -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51193 0.9 0.459403
Target:  5'- aCGUUGCAGCACGAUUUAGUGaaCUGCa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACacGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51258 0.94 0.302035
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUAUg -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51320 0.74 0.992075
Target:  5'- --aCGUAAUACGAUUUAucGUGCUGCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51322 0.98 0.194461
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUACa -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51385 0.74 0.992075
Target:  5'- --aCGUAAUACGAUUUAucGUGCUGCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51387 0.97 0.220462
Target:  5'- aCGUUGCAGCACGAUUUAGUGaGCUGCu -3'
miRNA:   3'- -GCAGCGUUGUGCUAAAUCACaCGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51450 0.74 0.992075
Target:  5'- --aCGUAAUACGAUUUAucGUGCUGCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51531 0.74 0.992075
Target:  5'- --aCGUAAUACGAUUUAucGUGCUGCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 51596 0.74 0.992075
Target:  5'- --aCGUAAUACGAUUUAucGUGCUGCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.