miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10571 3' -55.4 NC_002687.1 + 226198 0.66 0.986799
Target:  5'- aAGGUCGuGCucaagccggacaggGGGGUGGCgUggGCGGCc- -3'
miRNA:   3'- -UCCAGC-CG--------------UUCCACCG-GuuUGCUGac -5'
10571 3' -55.4 NC_002687.1 + 331675 0.66 0.985699
Target:  5'- cAGuGUCGGUGucGGUGGCUccACGACc- -3'
miRNA:   3'- -UC-CAGCCGUu-CCACCGGuuUGCUGac -5'
10571 3' -55.4 NC_002687.1 + 198326 0.66 0.985699
Target:  5'- --cUCGGCAuGGUGGCacaCGAAaGACUGa -3'
miRNA:   3'- uccAGCCGUuCCACCG---GUUUgCUGAC- -5'
10571 3' -55.4 NC_002687.1 + 258739 0.66 0.982168
Target:  5'- aAGGgagCGGUAAGG-GGauuaCCAAGCGAUUu -3'
miRNA:   3'- -UCCa--GCCGUUCCaCC----GGUUUGCUGAc -5'
10571 3' -55.4 NC_002687.1 + 281167 0.66 0.980174
Target:  5'- aAGGUaGGCGuGGgGGCCGAgGCGGCg- -3'
miRNA:   3'- -UCCAgCCGUuCCaCCGGUU-UGCUGac -5'
10571 3' -55.4 NC_002687.1 + 25689 0.66 0.980174
Target:  5'- cAGGagGGUAAGGaGGCgcaaGAACGACg- -3'
miRNA:   3'- -UCCagCCGUUCCaCCGg---UUUGCUGac -5'
10571 3' -55.4 NC_002687.1 + 154534 0.66 0.980174
Target:  5'- aAGcGUUGGCGcguuGGUGGCCAugguGACGcgcggaacACUGa -3'
miRNA:   3'- -UC-CAGCCGUu---CCACCGGU----UUGC--------UGAC- -5'
10571 3' -55.4 NC_002687.1 + 249847 0.67 0.975694
Target:  5'- gGGGUCa-CGAGGUGGaCGAcucucgccACGACUGg -3'
miRNA:   3'- -UCCAGccGUUCCACCgGUU--------UGCUGAC- -5'
10571 3' -55.4 NC_002687.1 + 276953 0.67 0.975694
Target:  5'- uGGUCgGGguGGGUGuGCCAcauGAUgaGACUGu -3'
miRNA:   3'- uCCAG-CCguUCCAC-CGGU---UUG--CUGAC- -5'
10571 3' -55.4 NC_002687.1 + 6489 0.67 0.975452
Target:  5'- ---aUGGCuaagcugGAGGUGGCCGAACGAg-- -3'
miRNA:   3'- uccaGCCG-------UUCCACCGGUUUGCUgac -5'
10571 3' -55.4 NC_002687.1 + 307652 0.67 0.970517
Target:  5'- uGGGaUCGGCGGcGGUGGCgGugGugGuGCUGg -3'
miRNA:   3'- -UCC-AGCCGUU-CCACCGgU--UugC-UGAC- -5'
10571 3' -55.4 NC_002687.1 + 204157 0.67 0.970517
Target:  5'- gAGcGUCcGUgGAGGUGGCCAuuAACGACUc -3'
miRNA:   3'- -UC-CAGcCG-UUCCACCGGU--UUGCUGAc -5'
10571 3' -55.4 NC_002687.1 + 295804 0.67 0.970517
Target:  5'- cGGUUGGagGGGGUGGCCAucuCGcGCUu -3'
miRNA:   3'- uCCAGCCg-UUCCACCGGUuu-GC-UGAc -5'
10571 3' -55.4 NC_002687.1 + 66038 0.68 0.954219
Target:  5'- gGGuGUCGGCAAGGUaauGGaaaccaCGAACGAUg- -3'
miRNA:   3'- -UC-CAGCCGUUCCA---CCg-----GUUUGCUGac -5'
10571 3' -55.4 NC_002687.1 + 91992 0.68 0.946264
Target:  5'- uGGUCGGCGAgcucGGUGagacauCCAAAUGAUUGc -3'
miRNA:   3'- uCCAGCCGUU----CCACc-----GGUUUGCUGAC- -5'
10571 3' -55.4 NC_002687.1 + 215167 0.69 0.937449
Target:  5'- uGGGUCaGCGAGGgcaUGGCCG--UGugUGg -3'
miRNA:   3'- -UCCAGcCGUUCC---ACCGGUuuGCugAC- -5'
10571 3' -55.4 NC_002687.1 + 274643 0.69 0.937449
Target:  5'- uAGaGUCaGCAAGGU-GCCGGAUGACa- -3'
miRNA:   3'- -UC-CAGcCGUUCCAcCGGUUUGCUGac -5'
10571 3' -55.4 NC_002687.1 + 280949 0.69 0.916642
Target:  5'- cAGcGUCGGCGggggccuGGGUGGCgGcAGCGGCg- -3'
miRNA:   3'- -UC-CAGCCGU-------UCCACCGgU-UUGCUGac -5'
10571 3' -55.4 NC_002687.1 + 37731 0.71 0.866345
Target:  5'- -cGUCGGCAaacauccccugGGGaacuuUGGCCGAcCGACUGg -3'
miRNA:   3'- ucCAGCCGU-----------UCC-----ACCGGUUuGCUGAC- -5'
10571 3' -55.4 NC_002687.1 + 104171 0.71 0.851613
Target:  5'- cGGUUGGCAAGaccgGGCCucgaGAACGACg- -3'
miRNA:   3'- uCCAGCCGUUCca--CCGG----UUUGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.