Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10572 | 3' | -55.9 | NC_002687.1 | + | 329370 | 0.66 | 0.982627 |
Target: 5'- gGCUUUCACCGUGCcaAUCGAGGa---- -3' miRNA: 3'- gUGAGAGUGGCGCG--UGGUUCCagugc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 325758 | 0.66 | 0.978599 |
Target: 5'- uGCUCUcCGCCGuUGCACCGAcagCGCGu -3' miRNA: 3'- gUGAGA-GUGGC-GCGUGGUUccaGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 312427 | 0.67 | 0.965567 |
Target: 5'- gGCgCUCACagcaCGCGCCAuGGUCAUGc -3' miRNA: 3'- gUGaGAGUGgc--GCGUGGUuCCAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 308803 | 0.69 | 0.912343 |
Target: 5'- cCGgUCUCACCGggagggggcgcgccCGCcccGCCGGGGUCGCc -3' miRNA: 3'- -GUgAGAGUGGC--------------GCG---UGGUUCCAGUGc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 300528 | 1.08 | 0.007519 |
Target: 5'- aCACUCUCACCGCGCACCAAGGUCACGu -3' miRNA: 3'- -GUGAGAGUGGCGCGUGGUUCCAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 298222 | 0.67 | 0.962406 |
Target: 5'- cUACUgUUCGCCGCaGcCACCGGGG-CACa -3' miRNA: 3'- -GUGA-GAGUGGCG-C-GUGGUUCCaGUGc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 297436 | 0.7 | 0.876819 |
Target: 5'- gCAUgCUCAUCGCGaCGCaCAAGGUCAgCGc -3' miRNA: 3'- -GUGaGAGUGGCGC-GUG-GUUCCAGU-GC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 297019 | 0.66 | 0.985898 |
Target: 5'- --gUCUCGCUGUGCGCCGAGauagagcaacgauGUgCGCGc -3' miRNA: 3'- gugAGAGUGGCGCGUGGUUC-------------CA-GUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 248217 | 0.68 | 0.951344 |
Target: 5'- aCAaaaUCUCGgCGCGCAUCAAgaagcucuguuauGGUCugGa -3' miRNA: 3'- -GUg--AGAGUgGCGCGUGGUU-------------CCAGugC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 230941 | 0.69 | 0.929773 |
Target: 5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3' miRNA: 3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 230697 | 0.69 | 0.929773 |
Target: 5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3' miRNA: 3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 230575 | 0.69 | 0.929773 |
Target: 5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3' miRNA: 3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 230454 | 0.69 | 0.929773 |
Target: 5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3' miRNA: 3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 229850 | 0.66 | 0.984413 |
Target: 5'- aCGC-CUCACCGUGCuACCugcaUCGCGa -3' miRNA: 3'- -GUGaGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 229606 | 0.69 | 0.929773 |
Target: 5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3' miRNA: 3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 229485 | 0.69 | 0.929773 |
Target: 5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3' miRNA: 3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 229371 | 0.69 | 0.924223 |
Target: 5'- gCACgUCUCACCGUgcuaccuGCACCAcGuGUUACGu -3' miRNA: 3'- -GUG-AGAGUGGCG-------CGUGGUuC-CAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 215464 | 0.66 | 0.982627 |
Target: 5'- uCGCUCUCGaaggUCGCGUAgCCcGGGUgCACa -3' miRNA: 3'- -GUGAGAGU----GGCGCGU-GGuUCCA-GUGc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 182478 | 0.75 | 0.631972 |
Target: 5'- cCGCUUUCGCCaGCuGCGCUucGGGUCGCGa -3' miRNA: 3'- -GUGAGAGUGG-CG-CGUGGu-UCCAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 180596 | 0.7 | 0.883533 |
Target: 5'- aGCUCUCACaaagGCGUGCgCGGGGUCGa- -3' miRNA: 3'- gUGAGAGUGg---CGCGUG-GUUCCAGUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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