Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10572 | 3' | -55.9 | NC_002687.1 | + | 215464 | 0.66 | 0.982627 |
Target: 5'- uCGCUCUCGaaggUCGCGUAgCCcGGGUgCACa -3' miRNA: 3'- -GUGAGAGU----GGCGCGU-GGuUCCA-GUGc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 27947 | 0.76 | 0.583528 |
Target: 5'- aACUCUUACgGCGgACCAAGGaaggCACGa -3' miRNA: 3'- gUGAGAGUGgCGCgUGGUUCCa---GUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 180332 | 0.71 | 0.862805 |
Target: 5'- cCACUCguaGCCGCGCGCCAacaaagAGGgaauaACGu -3' miRNA: 3'- -GUGAGag-UGGCGCGUGGU------UCCag---UGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 180596 | 0.7 | 0.883533 |
Target: 5'- aGCUCUCACaaagGCGUGCgCGGGGUCGa- -3' miRNA: 3'- gUGAGAGUGg---CGCGUG-GUUCCAGUgc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 308803 | 0.69 | 0.912343 |
Target: 5'- cCGgUCUCACCGggagggggcgcgccCGCcccGCCGGGGUCGCc -3' miRNA: 3'- -GUgAGAGUGGC--------------GCG---UGGUUCCAGUGc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 145835 | 0.68 | 0.939196 |
Target: 5'- uGCUCgccgaGgCGCGCGCCGGGGcgCugGg -3' miRNA: 3'- gUGAGag---UgGCGCGUGGUUCCa-GugC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 106943 | 0.68 | 0.939196 |
Target: 5'- uCAUUCUa--CGCGCACCAcaaGGcGUCACa -3' miRNA: 3'- -GUGAGAgugGCGCGUGGU---UC-CAGUGc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 114438 | 0.67 | 0.95905 |
Target: 5'- -uUUUUCGCauucaGCGCAgCAAGGUUugGg -3' miRNA: 3'- guGAGAGUGg----CGCGUgGUUCCAGugC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 298222 | 0.67 | 0.962406 |
Target: 5'- cUACUgUUCGCCGCaGcCACCGGGG-CACa -3' miRNA: 3'- -GUGA-GAGUGGCG-C-GUGGUUCCaGUGc -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 312427 | 0.67 | 0.965567 |
Target: 5'- gGCgCUCACagcaCGCGCCAuGGUCAUGc -3' miRNA: 3'- gUGaGAGUGgc--GCGUGGUuCCAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 325758 | 0.66 | 0.978599 |
Target: 5'- uGCUCUcCGCCGuUGCACCGAcagCGCGu -3' miRNA: 3'- gUGAGA-GUGGC-GCGUGGUUccaGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 230454 | 0.69 | 0.929773 |
Target: 5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3' miRNA: 3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 229606 | 0.69 | 0.929773 |
Target: 5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3' miRNA: 3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 229485 | 0.69 | 0.929773 |
Target: 5'- gCACgUCUCACCGUGCuACCugcaUCACGa -3' miRNA: 3'- -GUG-AGAGUGGCGCG-UGGuuccAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 229371 | 0.69 | 0.924223 |
Target: 5'- gCACgUCUCACCGUgcuaccuGCACCAcGuGUUACGu -3' miRNA: 3'- -GUG-AGAGUGGCG-------CGUGGUuC-CAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 80091 | 0.69 | 0.914024 |
Target: 5'- aCACUUUCAUCGa--GCCGGuGGUCACGu -3' miRNA: 3'- -GUGAGAGUGGCgcgUGGUU-CCAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 153850 | 0.7 | 0.883533 |
Target: 5'- gACUCU--UCGUGCGCCAGGGgaaCACGc -3' miRNA: 3'- gUGAGAguGGCGCGUGGUUCCa--GUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 297436 | 0.7 | 0.876819 |
Target: 5'- gCAUgCUCAUCGCGaCGCaCAAGGUCAgCGc -3' miRNA: 3'- -GUGaGAGUGGCGC-GUG-GUUCCAGU-GC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 182478 | 0.75 | 0.631972 |
Target: 5'- cCGCUUUCGCCaGCuGCGCUucGGGUCGCGa -3' miRNA: 3'- -GUGAGAGUGG-CG-CGUGGu-UCCAGUGC- -5' |
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10572 | 3' | -55.9 | NC_002687.1 | + | 297019 | 0.66 | 0.985898 |
Target: 5'- --gUCUCGCUGUGCGCCGAGauagagcaacgauGUgCGCGc -3' miRNA: 3'- gugAGAGUGGCGCGUGGUUC-------------CA-GUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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