miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10578 3' -58.1 NC_002687.1 + 256269 0.67 0.910849
Target:  5'- aUGGUgAGCUGCUGguuaGAUGCGCuuGCu -3'
miRNA:   3'- cGCCG-UCGACGACa---CUGCGUGugCGc -5'
10578 3' -58.1 NC_002687.1 + 170420 0.67 0.905109
Target:  5'- gGCGuCGGUUGCUGUaGACGacgACAuCGCGg -3'
miRNA:   3'- -CGCcGUCGACGACA-CUGCg--UGU-GCGC- -5'
10578 3' -58.1 NC_002687.1 + 274423 0.69 0.851984
Target:  5'- cGUGGCGGUUGUUcUGACGCACGg--- -3'
miRNA:   3'- -CGCCGUCGACGAcACUGCGUGUgcgc -5'
10578 3' -58.1 NC_002687.1 + 331220 0.69 0.836849
Target:  5'- aGCGaGCGGgcCUGCUGUGGCGUcaGCGUu -3'
miRNA:   3'- -CGC-CGUC--GACGACACUGCGugUGCGc -5'
10578 3' -58.1 NC_002687.1 + 297325 0.7 0.812929
Target:  5'- uCGGCGGaCUGCUugcggaacucgcGUGcgGCGCGCGCGgGg -3'
miRNA:   3'- cGCCGUC-GACGA------------CAC--UGCGUGUGCgC- -5'
10578 3' -58.1 NC_002687.1 + 23964 0.7 0.807983
Target:  5'- cGUGGCGGCguggugguguggcaGCaGUGACGCAgaGCGCa -3'
miRNA:   3'- -CGCCGUCGa-------------CGaCACUGCGUg-UGCGc -5'
10578 3' -58.1 NC_002687.1 + 307645 0.7 0.804657
Target:  5'- gGCGGCGGUgGCgGUgGugGUGCugGCa -3'
miRNA:   3'- -CGCCGUCGaCGaCA-CugCGUGugCGc -5'
10578 3' -58.1 NC_002687.1 + 13317 0.7 0.787705
Target:  5'- cCGGC-GCUGCUGUGAucggcUGCGCuccUGCGa -3'
miRNA:   3'- cGCCGuCGACGACACU-----GCGUGu--GCGC- -5'
10578 3' -58.1 NC_002687.1 + 230384 0.71 0.752377
Target:  5'- -aGGU-GCUGCUGUGuCGCACACuaagucguguuGCGa -3'
miRNA:   3'- cgCCGuCGACGACACuGCGUGUG-----------CGC- -5'
10578 3' -58.1 NC_002687.1 + 295128 0.71 0.749661
Target:  5'- uCGGCGGaUUGCUugcggaacucgcgaGcGGCGCGCGCGCGg -3'
miRNA:   3'- cGCCGUC-GACGA--------------CaCUGCGUGUGCGC- -5'
10578 3' -58.1 NC_002687.1 + 307615 0.66 0.936399
Target:  5'- gGCGGCGGCggUGCUG-GugGUGgAgGCc -3'
miRNA:   3'- -CGCCGUCG--ACGACaCugCGUgUgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.