miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10580 5' -52 NC_002687.1 + 330571 0.68 0.99421
Target:  5'- uGGCG-UGCACaUGCCggcaGCCGUCGUGGCg -3'
miRNA:   3'- -CUGUaACGUG-GUGG----CGGUAGUACUGg -5'
10580 5' -52 NC_002687.1 + 112969 0.68 0.99421
Target:  5'- uGACugucUGCACCagACCGCUcuUCuUGACCg -3'
miRNA:   3'- -CUGua--ACGUGG--UGGCGGu-AGuACUGG- -5'
10580 5' -52 NC_002687.1 + 254349 0.68 0.99421
Target:  5'- gGGCGgacUGCGCguCgGCCGUCAUGGuguCCg -3'
miRNA:   3'- -CUGUa--ACGUGguGgCGGUAGUACU---GG- -5'
10580 5' -52 NC_002687.1 + 309919 0.68 0.99421
Target:  5'- cGCGggcgGCACCGCCGaCGUucCAUGACg -3'
miRNA:   3'- cUGUaa--CGUGGUGGCgGUA--GUACUGg -5'
10580 5' -52 NC_002687.1 + 295883 0.68 0.99421
Target:  5'- -cCGcgGCAUCACCGCguUCGUguacGACCa -3'
miRNA:   3'- cuGUaaCGUGGUGGCGguAGUA----CUGG- -5'
10580 5' -52 NC_002687.1 + 210387 0.68 0.99421
Target:  5'- uGCAgcUGCACCACUGCCAc---GACUg -3'
miRNA:   3'- cUGUa-ACGUGGUGGCGGUaguaCUGG- -5'
10580 5' -52 NC_002687.1 + 224490 0.68 0.99421
Target:  5'- -----aGCGCCACCGCCAccgcCAgcGCCa -3'
miRNA:   3'- cuguaaCGUGGUGGCGGUa---GUacUGG- -5'
10580 5' -52 NC_002687.1 + 4603 0.68 0.993349
Target:  5'- cGGCGcuucuagGCACCGCgGCCGUaCAUGGUCa -3'
miRNA:   3'- -CUGUaa-----CGUGGUGgCGGUA-GUACUGG- -5'
10580 5' -52 NC_002687.1 + 29856 0.68 0.993349
Target:  5'- cGCAcgGaUACC-CCGCaagCAUCAUGACCa -3'
miRNA:   3'- cUGUaaC-GUGGuGGCG---GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 87347 0.68 0.992388
Target:  5'- gGGCAggucaGCGCCACaCGCCcggCGuUGACCc -3'
miRNA:   3'- -CUGUaa---CGUGGUG-GCGGua-GU-ACUGG- -5'
10580 5' -52 NC_002687.1 + 329140 0.68 0.992388
Target:  5'- aGGCAUgcugGCACCAgcugcuUCGCCGaugcUCuUGGCCa -3'
miRNA:   3'- -CUGUAa---CGUGGU------GGCGGU----AGuACUGG- -5'
10580 5' -52 NC_002687.1 + 3226 0.68 0.99132
Target:  5'- cGACGaagGCGCCAUcggCGCCcUCGaGACCg -3'
miRNA:   3'- -CUGUaa-CGUGGUG---GCGGuAGUaCUGG- -5'
10580 5' -52 NC_002687.1 + 25779 0.68 0.99132
Target:  5'- cGACAgaaCACCACCGUgGUCAUuAUCg -3'
miRNA:   3'- -CUGUaacGUGGUGGCGgUAGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 200437 0.69 0.990137
Target:  5'- cGACcuUUGCgGCUGaaGUCAUCGUGACCa -3'
miRNA:   3'- -CUGu-AACG-UGGUggCGGUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 212714 0.69 0.990137
Target:  5'- aGAC--UGcCACCACCGCUGUCgacgGUGGCg -3'
miRNA:   3'- -CUGuaAC-GUGGUGGCGGUAG----UACUGg -5'
10580 5' -52 NC_002687.1 + 116696 0.69 0.988832
Target:  5'- gGACugugGC-UCAUCGCCAUUAUGugCa -3'
miRNA:   3'- -CUGuaa-CGuGGUGGCGGUAGUACugG- -5'
10580 5' -52 NC_002687.1 + 304204 0.69 0.988832
Target:  5'- gGGCuagGC-CCGCUGCUGUCAucggUGGCCg -3'
miRNA:   3'- -CUGuaaCGuGGUGGCGGUAGU----ACUGG- -5'
10580 5' -52 NC_002687.1 + 145686 0.69 0.987396
Target:  5'- uGGCGgacUGCugCGCCGUCGUCAccgcgagagcGACCc -3'
miRNA:   3'- -CUGUa--ACGugGUGGCGGUAGUa---------CUGG- -5'
10580 5' -52 NC_002687.1 + 307894 0.69 0.987396
Target:  5'- cACGggaUGUACCGCUGCCAcaucacgcggCGUGACUg -3'
miRNA:   3'- cUGUa--ACGUGGUGGCGGUa---------GUACUGG- -5'
10580 5' -52 NC_002687.1 + 3093 0.69 0.985821
Target:  5'- cGACAUUcGCACCGgCGUUgAUCAgugcGACCa -3'
miRNA:   3'- -CUGUAA-CGUGGUgGCGG-UAGUa---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.