miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10580 5' -52 NC_002687.1 + 116696 0.69 0.988832
Target:  5'- gGACugugGC-UCAUCGCCAUUAUGugCa -3'
miRNA:   3'- -CUGuaa-CGuGGUGGCGGUAGUACugG- -5'
10580 5' -52 NC_002687.1 + 118431 0.67 0.996803
Target:  5'- aGACAUUGUAuCCAcCCGCaagggCggGACCu -3'
miRNA:   3'- -CUGUAACGU-GGU-GGCGgua--GuaCUGG- -5'
10580 5' -52 NC_002687.1 + 124888 0.66 0.998352
Target:  5'- cACA-UGCAgaCGCCGUugaccaucaauCAUCGUGACCu -3'
miRNA:   3'- cUGUaACGUg-GUGGCG-----------GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 128141 0.66 0.998041
Target:  5'- --uGUUGCugCGCguCGgCAUCAgUGACCa -3'
miRNA:   3'- cugUAACGugGUG--GCgGUAGU-ACUGG- -5'
10580 5' -52 NC_002687.1 + 128813 0.69 0.984101
Target:  5'- aGACAgUUGUGCCGCCGCCucCAcGcACCg -3'
miRNA:   3'- -CUGU-AACGUGGUGGCGGuaGUaC-UGG- -5'
10580 5' -52 NC_002687.1 + 139599 0.66 0.998849
Target:  5'- uACAcgGCuCCAUCGCCGUaguUGACUc -3'
miRNA:   3'- cUGUaaCGuGGUGGCGGUAgu-ACUGG- -5'
10580 5' -52 NC_002687.1 + 145075 0.66 0.998849
Target:  5'- --gAUUGCAgCCcaggGCCGCCAaaAUGAUCa -3'
miRNA:   3'- cugUAACGU-GG----UGGCGGUagUACUGG- -5'
10580 5' -52 NC_002687.1 + 145686 0.69 0.987396
Target:  5'- uGGCGgacUGCugCGCCGUCGUCAccgcgagagcGACCc -3'
miRNA:   3'- -CUGUa--ACGugGUGGCGGUAGUa---------CUGG- -5'
10580 5' -52 NC_002687.1 + 146020 0.66 0.998849
Target:  5'- ----cUGCGCCGCCGCUucuccGUCG-GACa -3'
miRNA:   3'- cuguaACGUGGUGGCGG-----UAGUaCUGg -5'
10580 5' -52 NC_002687.1 + 148680 0.73 0.920697
Target:  5'- --aGUUGCGCUgaggACUGCCAUCAcgggGACCu -3'
miRNA:   3'- cugUAACGUGG----UGGCGGUAGUa---CUGG- -5'
10580 5' -52 NC_002687.1 + 154305 0.66 0.998619
Target:  5'- cGCAacUGCgACCAagcggUCGCCAaguUCGUGGCCg -3'
miRNA:   3'- cUGUa-ACG-UGGU-----GGCGGU---AGUACUGG- -5'
10580 5' -52 NC_002687.1 + 154645 0.7 0.975604
Target:  5'- -cCGUUGUgucgGCCACCGCCAcCGUagauccaucGACCa -3'
miRNA:   3'- cuGUAACG----UGGUGGCGGUaGUA---------CUGG- -5'
10580 5' -52 NC_002687.1 + 155479 0.66 0.999046
Target:  5'- -cCAUUaGUACCuCUGacgaCAUCGUGGCCg -3'
miRNA:   3'- cuGUAA-CGUGGuGGCg---GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 159211 0.67 0.995663
Target:  5'- uGGCcUUGUcgacgGCCGCCGCC-UCcgGGCUu -3'
miRNA:   3'- -CUGuAACG-----UGGUGGCGGuAGuaCUGG- -5'
10580 5' -52 NC_002687.1 + 159953 0.66 0.998619
Target:  5'- gGGCGgccaagGCAgCCGCCGCCAa---GGCCa -3'
miRNA:   3'- -CUGUaa----CGU-GGUGGCGGUaguaCUGG- -5'
10580 5' -52 NC_002687.1 + 162241 0.67 0.995663
Target:  5'- gGAUGUUucGCcacuACCACCGCCuuccuUCAUGAgCg -3'
miRNA:   3'- -CUGUAA--CG----UGGUGGCGGu----AGUACUgG- -5'
10580 5' -52 NC_002687.1 + 166446 0.66 0.999046
Target:  5'- cGGCAcggGCAaguCCACCGCgGUUgcgAUGAUCg -3'
miRNA:   3'- -CUGUaa-CGU---GGUGGCGgUAG---UACUGG- -5'
10580 5' -52 NC_002687.1 + 182546 0.66 0.998352
Target:  5'- cGAUGUU-CGCCACCGUCccCAcGGCCa -3'
miRNA:   3'- -CUGUAAcGUGGUGGCGGuaGUaCUGG- -5'
10580 5' -52 NC_002687.1 + 183124 0.75 0.822694
Target:  5'- ----cUGaCcCCACCGCCGUUAUGGCCa -3'
miRNA:   3'- cuguaAC-GuGGUGGCGGUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 200437 0.69 0.990137
Target:  5'- cGACcuUUGCgGCUGaaGUCAUCGUGACCa -3'
miRNA:   3'- -CUGu-AACG-UGGUggCGGUAGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.