miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10580 5' -52 NC_002687.1 + 3093 0.69 0.985821
Target:  5'- cGACAUUcGCACCGgCGUUgAUCAgugcGACCa -3'
miRNA:   3'- -CUGUAA-CGUGGUgGCGG-UAGUa---CUGG- -5'
10580 5' -52 NC_002687.1 + 3226 0.68 0.99132
Target:  5'- cGACGaagGCGCCAUcggCGCCcUCGaGACCg -3'
miRNA:   3'- -CUGUaa-CGUGGUG---GCGGuAGUaCUGG- -5'
10580 5' -52 NC_002687.1 + 3635 0.67 0.997684
Target:  5'- gGACAcaccGCACUACacuuCGCCAUCGguggucgaaaccUGGCCg -3'
miRNA:   3'- -CUGUaa--CGUGGUG----GCGGUAGU------------ACUGG- -5'
10580 5' -52 NC_002687.1 + 4603 0.68 0.993349
Target:  5'- cGGCGcuucuagGCACCGCgGCCGUaCAUGGUCa -3'
miRNA:   3'- -CUGUaa-----CGUGGUGgCGGUA-GUACUGG- -5'
10580 5' -52 NC_002687.1 + 18944 0.66 0.998619
Target:  5'- uGACcacaGCuucccCCGCCGCCAUCGcGugCa -3'
miRNA:   3'- -CUGuaa-CGu----GGUGGCGGUAGUaCugG- -5'
10580 5' -52 NC_002687.1 + 21056 0.76 0.795992
Target:  5'- cGACuUUGCugCACUGCgaggagacaaugaUAUCAUGACCg -3'
miRNA:   3'- -CUGuAACGugGUGGCG-------------GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 24909 0.66 0.998352
Target:  5'- ---uUUGCGCaaacguCGCUGCCGUCAUGAg- -3'
miRNA:   3'- cuguAACGUG------GUGGCGGUAGUACUgg -5'
10580 5' -52 NC_002687.1 + 25779 0.68 0.99132
Target:  5'- cGACAgaaCACCACCGUgGUCAUuAUCg -3'
miRNA:   3'- -CUGUaacGUGGUGGCGgUAGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 26166 0.66 0.998323
Target:  5'- -cCGUUGCGCCGgagggugUUGUCGUCGauaaUGACCa -3'
miRNA:   3'- cuGUAACGUGGU-------GGCGGUAGU----ACUGG- -5'
10580 5' -52 NC_002687.1 + 29856 0.68 0.993349
Target:  5'- cGCAcgGaUACC-CCGCaagCAUCAUGACCa -3'
miRNA:   3'- cUGUaaC-GUGGuGGCG---GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 30364 0.67 0.997273
Target:  5'- uACA---CGCCGCCGCCaAUCGUcACCg -3'
miRNA:   3'- cUGUaacGUGGUGGCGG-UAGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 34353 0.67 0.997684
Target:  5'- aGACAaaggUUGaCGCCGCCGCUAaccuauugUAUGACg -3'
miRNA:   3'- -CUGU----AAC-GUGGUGGCGGUa-------GUACUGg -5'
10580 5' -52 NC_002687.1 + 69405 0.7 0.975604
Target:  5'- cGACAccaccGcCACCGCCGCCAcCAUcGCCa -3'
miRNA:   3'- -CUGUaa---C-GUGGUGGCGGUaGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 80003 0.73 0.909273
Target:  5'- ---cUUGCGCCACCGCgaCAUCAgauacagcagUGGCCu -3'
miRNA:   3'- cuguAACGUGGUGGCG--GUAGU----------ACUGG- -5'
10580 5' -52 NC_002687.1 + 87347 0.68 0.992388
Target:  5'- gGGCAggucaGCGCCACaCGCCcggCGuUGACCc -3'
miRNA:   3'- -CUGUaa---CGUGGUG-GCGGua-GU-ACUGG- -5'
10580 5' -52 NC_002687.1 + 99870 0.66 0.998352
Target:  5'- aAUAcUGCACCACCaaaaCCuUCAUGGCg -3'
miRNA:   3'- cUGUaACGUGGUGGc---GGuAGUACUGg -5'
10580 5' -52 NC_002687.1 + 100882 0.75 0.847015
Target:  5'- aGACGUgGCGCCACUGgCCAaaaUCAUGuCCu -3'
miRNA:   3'- -CUGUAaCGUGGUGGC-GGU---AGUACuGG- -5'
10580 5' -52 NC_002687.1 + 103280 0.7 0.977985
Target:  5'- -cCGUUGC-CUAUCGCCAUCAaGuACCu -3'
miRNA:   3'- cuGUAACGuGGUGGCGGUAGUaC-UGG- -5'
10580 5' -52 NC_002687.1 + 107889 0.66 0.998849
Target:  5'- aACGUucaUGCguagGCCAUCGCCGUC--GGCCc -3'
miRNA:   3'- cUGUA---ACG----UGGUGGCGGUAGuaCUGG- -5'
10580 5' -52 NC_002687.1 + 112969 0.68 0.99421
Target:  5'- uGACugucUGCACCagACCGCUcuUCuUGACCg -3'
miRNA:   3'- -CUGua--ACGUGG--UGGCGGu-AGuACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.