miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10580 5' -52 NC_002687.1 + 315918 1.14 0.00777
Target:  5'- cGACAUUGCACCACCGCCAUCAUGACCg -3'
miRNA:   3'- -CUGUAACGUGGUGGCGGUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 237602 0.81 0.563151
Target:  5'- gGACA---CACCACCGCCGUCAUugacGACCg -3'
miRNA:   3'- -CUGUaacGUGGUGGCGGUAGUA----CUGG- -5'
10580 5' -52 NC_002687.1 + 314117 0.78 0.692939
Target:  5'- aGCugucgGCACCGCCGCCAUCAUaGCUu -3'
miRNA:   3'- cUGuaa--CGUGGUGGCGGUAGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 295190 0.77 0.769771
Target:  5'- -uUcgUGCGCCAaaacuCCGCCAUCuUGGCCg -3'
miRNA:   3'- cuGuaACGUGGU-----GGCGGUAGuACUGG- -5'
10580 5' -52 NC_002687.1 + 21056 0.76 0.795992
Target:  5'- cGACuUUGCugCACUGCgaggagacaaugaUAUCAUGACCg -3'
miRNA:   3'- -CUGuAACGugGUGGCG-------------GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 183124 0.75 0.822694
Target:  5'- ----cUGaCcCCACCGCCGUUAUGGCCa -3'
miRNA:   3'- cuguaAC-GuGGUGGCGGUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 100882 0.75 0.847015
Target:  5'- aGACGUgGCGCCACUGgCCAaaaUCAUGuCCu -3'
miRNA:   3'- -CUGUAaCGUGGUGGC-GGU---AGUACuGG- -5'
10580 5' -52 NC_002687.1 + 210298 0.75 0.862303
Target:  5'- cACAUacgGCACCACCGCCAcCAcgGGCa -3'
miRNA:   3'- cUGUAa--CGUGGUGGCGGUaGUa-CUGg -5'
10580 5' -52 NC_002687.1 + 208944 0.73 0.909273
Target:  5'- -----gGCACCACCGUCGUCGUcGCUg -3'
miRNA:   3'- cuguaaCGUGGUGGCGGUAGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 80003 0.73 0.909273
Target:  5'- ---cUUGCGCCACCGCgaCAUCAgauacagcagUGGCCu -3'
miRNA:   3'- cuguAACGUGGUGGCG--GUAGU----------ACUGG- -5'
10580 5' -52 NC_002687.1 + 317451 0.73 0.915099
Target:  5'- uACAUcaccagGUuCCGCCGCCA-CAUGGCCa -3'
miRNA:   3'- cUGUAa-----CGuGGUGGCGGUaGUACUGG- -5'
10580 5' -52 NC_002687.1 + 269516 0.73 0.915099
Target:  5'- aACGUguugGCACCACCaguGCCAaggCGUGGCUg -3'
miRNA:   3'- cUGUAa---CGUGGUGG---CGGUa--GUACUGG- -5'
10580 5' -52 NC_002687.1 + 148680 0.73 0.920697
Target:  5'- --aGUUGCGCUgaggACUGCCAUCAcgggGACCu -3'
miRNA:   3'- cugUAACGUGG----UGGCGGUAGUa---CUGG- -5'
10580 5' -52 NC_002687.1 + 208618 0.73 0.926066
Target:  5'- -----gGCACCACCGUCGUCGUcACUg -3'
miRNA:   3'- cuguaaCGUGGUGGCGGUAGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 208765 0.73 0.926066
Target:  5'- -----gGCACCACCGUCGUCGUcACUg -3'
miRNA:   3'- cuguaaCGUGGUGGCGGUAGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 332227 0.72 0.940793
Target:  5'- cGGCAUcaUG-ACCACCGCCGUCGUuggaGGCa -3'
miRNA:   3'- -CUGUA--ACgUGGUGGCGGUAGUA----CUGg -5'
10580 5' -52 NC_002687.1 + 307266 0.72 0.945245
Target:  5'- -----aGCACCGCCGCCGccCGUG-CCa -3'
miRNA:   3'- cuguaaCGUGGUGGCGGUa-GUACuGG- -5'
10580 5' -52 NC_002687.1 + 315686 0.72 0.949472
Target:  5'- cGGCAccaucgGCACCACCGCCAgccgcACCg -3'
miRNA:   3'- -CUGUaa----CGUGGUGGCGGUaguacUGG- -5'
10580 5' -52 NC_002687.1 + 237293 0.71 0.964186
Target:  5'- cACGUgucgUGCuuCACgGCCAUCAUGGCg -3'
miRNA:   3'- cUGUA----ACGugGUGgCGGUAGUACUGg -5'
10580 5' -52 NC_002687.1 + 311117 0.71 0.964186
Target:  5'- -uCcgUGCACUAcCCGCCAUCGUG-Cg -3'
miRNA:   3'- cuGuaACGUGGU-GGCGGUAGUACuGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.