miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10580 5' -52 NC_002687.1 + 315918 1.14 0.00777
Target:  5'- cGACAUUGCACCACCGCCAUCAUGACCg -3'
miRNA:   3'- -CUGUAACGUGGUGGCGGUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 87347 0.68 0.992388
Target:  5'- gGGCAggucaGCGCCACaCGCCcggCGuUGACCc -3'
miRNA:   3'- -CUGUaa---CGUGGUG-GCGGua-GU-ACUGG- -5'
10580 5' -52 NC_002687.1 + 330571 0.68 0.99421
Target:  5'- uGGCG-UGCACaUGCCggcaGCCGUCGUGGCg -3'
miRNA:   3'- -CUGUaACGUG-GUGG----CGGUAGUACUGg -5'
10580 5' -52 NC_002687.1 + 249388 0.66 0.999046
Target:  5'- cGGCAUcuugGUACCAuCCGCuCGUCAaaucucUGugCa -3'
miRNA:   3'- -CUGUAa---CGUGGU-GGCG-GUAGU------ACugG- -5'
10580 5' -52 NC_002687.1 + 317451 0.73 0.915099
Target:  5'- uACAUcaccagGUuCCGCCGCCA-CAUGGCCa -3'
miRNA:   3'- cUGUAa-----CGuGGUGGCGGUaGUACUGG- -5'
10580 5' -52 NC_002687.1 + 148680 0.73 0.920697
Target:  5'- --aGUUGCGCUgaggACUGCCAUCAcgggGACCu -3'
miRNA:   3'- cugUAACGUGG----UGGCGGUAGUa---CUGG- -5'
10580 5' -52 NC_002687.1 + 315686 0.72 0.949472
Target:  5'- cGGCAccaucgGCACCACCGCCAgccgcACCg -3'
miRNA:   3'- -CUGUaa----CGUGGUGGCGGUaguacUGG- -5'
10580 5' -52 NC_002687.1 + 237293 0.71 0.964186
Target:  5'- cACGUgucgUGCuuCACgGCCAUCAUGGCg -3'
miRNA:   3'- cUGUA----ACGugGUGgCGGUAGUACUGg -5'
10580 5' -52 NC_002687.1 + 279279 0.7 0.98019
Target:  5'- gGugGUgccgGCACCACCGgCCcaccagaagaGUCAgcgGACCc -3'
miRNA:   3'- -CugUAa---CGUGGUGGC-GG----------UAGUa--CUGG- -5'
10580 5' -52 NC_002687.1 + 25779 0.68 0.99132
Target:  5'- cGACAgaaCACCACCGUgGUCAUuAUCg -3'
miRNA:   3'- -CUGUaacGUGGUGGCGgUAGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 3093 0.69 0.985821
Target:  5'- cGACAUUcGCACCGgCGUUgAUCAgugcGACCa -3'
miRNA:   3'- -CUGUAA-CGUGGUgGCGG-UAGUa---CUGG- -5'
10580 5' -52 NC_002687.1 + 103280 0.7 0.977985
Target:  5'- -cCGUUGC-CUAUCGCCAUCAaGuACCu -3'
miRNA:   3'- cuGUAACGuGGUGGCGGUAGUaC-UGG- -5'
10580 5' -52 NC_002687.1 + 295190 0.77 0.769771
Target:  5'- -uUcgUGCGCCAaaacuCCGCCAUCuUGGCCg -3'
miRNA:   3'- cuGuaACGUGGU-----GGCGGUAGuACUGG- -5'
10580 5' -52 NC_002687.1 + 145686 0.69 0.987396
Target:  5'- uGGCGgacUGCugCGCCGUCGUCAccgcgagagcGACCc -3'
miRNA:   3'- -CUGUa--ACGugGUGGCGGUAGUa---------CUGG- -5'
10580 5' -52 NC_002687.1 + 21056 0.76 0.795992
Target:  5'- cGACuUUGCugCACUGCgaggagacaaugaUAUCAUGACCg -3'
miRNA:   3'- -CUGuAACGugGUGGCG-------------GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 154645 0.7 0.975604
Target:  5'- -cCGUUGUgucgGCCACCGCCAcCGUagauccaucGACCa -3'
miRNA:   3'- cuGUAACG----UGGUGGCGGUaGUA---------CUGG- -5'
10580 5' -52 NC_002687.1 + 116696 0.69 0.988832
Target:  5'- gGACugugGC-UCAUCGCCAUUAUGugCa -3'
miRNA:   3'- -CUGuaa-CGuGGUGGCGGUAGUACugG- -5'
10580 5' -52 NC_002687.1 + 29856 0.68 0.993349
Target:  5'- cGCAcgGaUACC-CCGCaagCAUCAUGACCa -3'
miRNA:   3'- cUGUaaC-GUGGuGGCG---GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 269516 0.73 0.915099
Target:  5'- aACGUguugGCACCACCaguGCCAaggCGUGGCUg -3'
miRNA:   3'- cUGUAa---CGUGGUGG---CGGUa--GUACUGG- -5'
10580 5' -52 NC_002687.1 + 307266 0.72 0.945245
Target:  5'- -----aGCACCGCCGCCGccCGUG-CCa -3'
miRNA:   3'- cuguaaCGUGGUGGCGGUa-GUACuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.