miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10582 3' -49.4 NC_002687.1 + 219050 0.68 0.999545
Target:  5'- gAGGGAgaaugCGGCGUgcuccgcggCCACGGAGaaGCAg -3'
miRNA:   3'- -UCCCUaaaa-GUUGCG---------GGUGCCUU--UGU- -5'
10582 3' -49.4 NC_002687.1 + 226822 0.72 0.987942
Target:  5'- uGGGGAgagUCGAguccgGUCCACGGGAGCu -3'
miRNA:   3'- -UCCCUaaaAGUUg----CGGGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 234750 0.7 0.997509
Target:  5'- uGGGAUcaUCccgGACgGCCC-CGGAAGCAu -3'
miRNA:   3'- uCCCUAaaAG---UUG-CGGGuGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 234929 0.68 0.999311
Target:  5'- cGGGAgaauaUggUGCCCGuCGGAAGCu -3'
miRNA:   3'- uCCCUaaaa-GuuGCGGGU-GCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 247221 1.1 0.023685
Target:  5'- cAGGGAUUUUCAACGCCCACGGAAACAg -3'
miRNA:   3'- -UCCCUAAAAGUUGCGGGUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 262102 0.74 0.957862
Target:  5'- cGGGAUgguuuaUUCGACGCCaagCACgGGAAGCAc -3'
miRNA:   3'- uCCCUAa-----AAGUUGCGG---GUG-CCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 272738 0.67 0.999855
Target:  5'- uGGGAcuuuccuuUUUUUAGCGUCCAuCGGAGc-- -3'
miRNA:   3'- uCCCU--------AAAAGUUGCGGGU-GCCUUugu -5'
10582 3' -49.4 NC_002687.1 + 280932 0.67 0.999707
Target:  5'- gGGGGcccguGUUgaagCAGCGUCgGCGGggGCc -3'
miRNA:   3'- -UCCC-----UAAaa--GUUGCGGgUGCCuuUGu -5'
10582 3' -49.4 NC_002687.1 + 301468 0.67 0.999887
Target:  5'- aAGGGAaaa-----GCCCAUGGAAGCc -3'
miRNA:   3'- -UCCCUaaaaguugCGGGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 306974 0.66 0.999913
Target:  5'- cGGGAUgaugcuaGACGUCUACGGugGCu -3'
miRNA:   3'- uCCCUAaaag---UUGCGGGUGCCuuUGu -5'
10582 3' -49.4 NC_002687.1 + 309481 0.67 0.999875
Target:  5'- cGGGGAgcuggugacggUCGACGCCUugccCGGGAAg- -3'
miRNA:   3'- -UCCCUaaa--------AGUUGCGGGu---GCCUUUgu -5'
10582 3' -49.4 NC_002687.1 + 317254 0.67 0.999816
Target:  5'- cGGGAUccggacgUUCGAgcUGCCCGCgcgcuggaGGAAGCAc -3'
miRNA:   3'- uCCCUAa------AAGUU--GCGGGUG--------CCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 318694 1.1 0.023685
Target:  5'- cAGGGAUUUUCAACGCCCACGGAAACAg -3'
miRNA:   3'- -UCCCUAAAAGUUGCGGGUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 319595 0.66 0.999933
Target:  5'- cGGGAgcgUUCGcgagagaagcACGgCCugGGAGAUg -3'
miRNA:   3'- uCCCUaa-AAGU----------UGCgGGugCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 330808 0.72 0.98284
Target:  5'- uGGGGAgg--CAugG-CCACGGAGACc -3'
miRNA:   3'- -UCCCUaaaaGUugCgGGUGCCUUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.