miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10582 3' -49.4 NC_002687.1 + 13057 0.66 0.999933
Target:  5'- gAGGuGAga---GAUGCuCCGCGGAAACu -3'
miRNA:   3'- -UCC-CUaaaagUUGCG-GGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 21265 0.68 0.999634
Target:  5'- cGGGGUUUUCAGauuggccccaacUGCCCAUGuuGggGCc -3'
miRNA:   3'- uCCCUAAAAGUU------------GCGGGUGC--CuuUGu -5'
10582 3' -49.4 NC_002687.1 + 22623 0.69 0.998979
Target:  5'- cGGGGA-----GGCGCUCACGGGAcGCGg -3'
miRNA:   3'- -UCCCUaaaagUUGCGGGUGCCUU-UGU- -5'
10582 3' -49.4 NC_002687.1 + 29072 0.66 0.999933
Target:  5'- cGGGGAUUcUUGuCGCauaCACGGGGAUg -3'
miRNA:   3'- -UCCCUAAaAGUuGCGg--GUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 33859 0.68 0.999311
Target:  5'- cGGGGAgaag-GACaCCCAUGGAAGCu -3'
miRNA:   3'- -UCCCUaaaagUUGcGGGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 45926 0.66 0.999947
Target:  5'- cGGGAaguUUUUCAagGCaCCCAUGGAgcucgggGACAg -3'
miRNA:   3'- uCCCU---AAAAGU--UGcGGGUGCCU-------UUGU- -5'
10582 3' -49.4 NC_002687.1 + 63337 0.81 0.718461
Target:  5'- aGGGGAagc-CGcCGCCCACGGAAACAg -3'
miRNA:   3'- -UCCCUaaaaGUuGCGGGUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 82774 0.71 0.99489
Target:  5'- uAGGG-UUUUCAGacuguaucaucgcauCGCCCACauacuGGAAGCAa -3'
miRNA:   3'- -UCCCuAAAAGUU---------------GCGGGUG-----CCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 89032 0.73 0.973698
Target:  5'- cGGGGGUgaguucgcgUUCAugGUCUGCGGAggUAa -3'
miRNA:   3'- -UCCCUAa--------AAGUugCGGGUGCCUuuGU- -5'
10582 3' -49.4 NC_002687.1 + 95030 0.66 0.999933
Target:  5'- uGGGc---UCAAUGUUgGCGGAGACGg -3'
miRNA:   3'- uCCCuaaaAGUUGCGGgUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 154771 0.68 0.999311
Target:  5'- aGGcGGGUUUuguagcucaaUCAACGCCauCACGGcGACAc -3'
miRNA:   3'- -UC-CCUAAA----------AGUUGCGG--GUGCCuUUGU- -5'
10582 3' -49.4 NC_002687.1 + 160445 0.67 0.999881
Target:  5'- cAGGGucaggaaGGCcaaGCCCACGGGGACc -3'
miRNA:   3'- -UCCCuaaaag-UUG---CGGGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 168254 0.66 0.999944
Target:  5'- gAGGcGUgucaUUUCAGCGCCCucagucaccacgagGCGGAGuACAg -3'
miRNA:   3'- -UCCcUA----AAAGUUGCGGG--------------UGCCUU-UGU- -5'
10582 3' -49.4 NC_002687.1 + 168843 0.69 0.998231
Target:  5'- aAGGG----UCAugGCCUuguagGCGGAGGCGu -3'
miRNA:   3'- -UCCCuaaaAGUugCGGG-----UGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 169510 0.67 0.999767
Target:  5'- -uGGAU--UCGACGCCUGCGGGc--- -3'
miRNA:   3'- ucCCUAaaAGUUGCGGGUGCCUuugu -5'
10582 3' -49.4 NC_002687.1 + 202318 0.66 0.999933
Target:  5'- gGGGGAagaaCAGCGCCUgauCGG-AGCAg -3'
miRNA:   3'- -UCCCUaaaaGUUGCGGGu--GCCuUUGU- -5'
10582 3' -49.4 NC_002687.1 + 205176 0.67 0.999767
Target:  5'- gAGGGAUUgUCgGGCGCguguUCACGaGAGACGa -3'
miRNA:   3'- -UCCCUAAaAG-UUGCG----GGUGC-CUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 207010 0.73 0.976257
Target:  5'- cGGGGGUccuUUUCGGgcgUGCCCGUGGAGACGu -3'
miRNA:   3'- -UCCCUA---AAAGUU---GCGGGUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 208361 0.67 0.999707
Target:  5'- uGGGAgcagCAGCGaCgAUGGAAGCAg -3'
miRNA:   3'- uCCCUaaaaGUUGCgGgUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 208508 0.67 0.999707
Target:  5'- uGGGAgcagCAGCGaCgAUGGAAGCAg -3'
miRNA:   3'- uCCCUaaaaGUUGCgGgUGCCUUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.