miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10582 3' -49.4 NC_002687.1 + 318694 1.1 0.023685
Target:  5'- cAGGGAUUUUCAACGCCCACGGAAACAg -3'
miRNA:   3'- -UCCCUAAAAGUUGCGGGUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 247221 1.1 0.023685
Target:  5'- cAGGGAUUUUCAACGCCCACGGAAACAg -3'
miRNA:   3'- -UCCCUAAAAGUUGCGGGUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 63337 0.81 0.718461
Target:  5'- aGGGGAagc-CGcCGCCCACGGAAACAg -3'
miRNA:   3'- -UCCCUaaaaGUuGCGGGUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 262102 0.74 0.957862
Target:  5'- cGGGAUgguuuaUUCGACGCCaagCACgGGAAGCAc -3'
miRNA:   3'- uCCCUAa-----AAGUUGCGG---GUG-CCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 89032 0.73 0.973698
Target:  5'- cGGGGGUgaguucgcgUUCAugGUCUGCGGAggUAa -3'
miRNA:   3'- -UCCCUAa--------AAGUugCGGGUGCCUuuGU- -5'
10582 3' -49.4 NC_002687.1 + 207010 0.73 0.976257
Target:  5'- cGGGGGUccuUUUCGGgcgUGCCCGUGGAGACGu -3'
miRNA:   3'- -UCCCUA---AAAGUU---GCGGGUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 330808 0.72 0.98284
Target:  5'- uGGGGAgg--CAugG-CCACGGAGACc -3'
miRNA:   3'- -UCCCUaaaaGUugCgGGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 226822 0.72 0.987942
Target:  5'- uGGGGAgagUCGAguccgGUCCACGGGAGCu -3'
miRNA:   3'- -UCCCUaaaAGUUg----CGGGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 82774 0.71 0.99489
Target:  5'- uAGGG-UUUUCAGacuguaucaucgcauCGCCCACauacuGGAAGCAa -3'
miRNA:   3'- -UCCCuAAAAGUU---------------GCGGGUG-----CCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 234750 0.7 0.997509
Target:  5'- uGGGAUcaUCccgGACgGCCC-CGGAAGCAu -3'
miRNA:   3'- uCCCUAaaAG---UUG-CGGGuGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 168843 0.69 0.998231
Target:  5'- aAGGG----UCAugGCCUuguagGCGGAGGCGu -3'
miRNA:   3'- -UCCCuaaaAGUugCGGG-----UGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 22623 0.69 0.998979
Target:  5'- cGGGGA-----GGCGCUCACGGGAcGCGg -3'
miRNA:   3'- -UCCCUaaaagUUGCGGGUGCCUU-UGU- -5'
10582 3' -49.4 NC_002687.1 + 234929 0.68 0.999311
Target:  5'- cGGGAgaauaUggUGCCCGuCGGAAGCu -3'
miRNA:   3'- uCCCUaaaa-GuuGCGGGU-GCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 33859 0.68 0.999311
Target:  5'- cGGGGAgaag-GACaCCCAUGGAAGCu -3'
miRNA:   3'- -UCCCUaaaagUUGcGGGUGCCUUUGu -5'
10582 3' -49.4 NC_002687.1 + 154771 0.68 0.999311
Target:  5'- aGGcGGGUUUuguagcucaaUCAACGCCauCACGGcGACAc -3'
miRNA:   3'- -UC-CCUAAA----------AGUUGCGG--GUGCCuUUGU- -5'
10582 3' -49.4 NC_002687.1 + 219050 0.68 0.999545
Target:  5'- gAGGGAgaaugCGGCGUgcuccgcggCCACGGAGaaGCAg -3'
miRNA:   3'- -UCCCUaaaa-GUUGCG---------GGUGCCUU--UGU- -5'
10582 3' -49.4 NC_002687.1 + 21265 0.68 0.999634
Target:  5'- cGGGGUUUUCAGauuggccccaacUGCCCAUGuuGggGCc -3'
miRNA:   3'- uCCCUAAAAGUU------------GCGGGUGC--CuuUGu -5'
10582 3' -49.4 NC_002687.1 + 208361 0.67 0.999707
Target:  5'- uGGGAgcagCAGCGaCgAUGGAAGCAg -3'
miRNA:   3'- uCCCUaaaaGUUGCgGgUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 208508 0.67 0.999707
Target:  5'- uGGGAgcagCAGCGaCgAUGGAAGCAg -3'
miRNA:   3'- uCCCUaaaaGUUGCgGgUGCCUUUGU- -5'
10582 3' -49.4 NC_002687.1 + 280932 0.67 0.999707
Target:  5'- gGGGGcccguGUUgaagCAGCGUCgGCGGggGCc -3'
miRNA:   3'- -UCCC-----UAAaa--GUUGCGGgUGCCuuUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.