miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10584 5' -55.4 NC_002687.1 + 324791 1.06 0.010653
Target:  5'- gACCUGUACCGCCGUACACACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 324407 1.06 0.010653
Target:  5'- gACCUGUACCGCCGUACACACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 324024 1.06 0.010653
Target:  5'- gACCUGUACCGCCGUACACACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 323640 1.06 0.010653
Target:  5'- gACCUGUACCGCCGUACACACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 325159 0.98 0.034158
Target:  5'- gGCCUGUACCGCCGUACcCACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGuGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 72914 0.72 0.788146
Target:  5'- cGCCgccGCCGCCG-ACACACCGcCGAg -3'
miRNA:   3'- -UGGacaUGGCGGCaUGUGUGGCuGUU- -5'
10584 5' -55.4 NC_002687.1 + 326700 0.72 0.805467
Target:  5'- uCCgagcagGuuGCCGUACACACCGACu- -3'
miRNA:   3'- uGGaca---UggCGGCAUGUGUGGCUGuu -5'
10584 5' -55.4 NC_002687.1 + 253488 0.72 0.813913
Target:  5'- gACCUGUgugcGCUGaCCGUACACACgGAuCAGu -3'
miRNA:   3'- -UGGACA----UGGC-GGCAUGUGUGgCU-GUU- -5'
10584 5' -55.4 NC_002687.1 + 159153 0.71 0.846102
Target:  5'- -gUUGUcGCCGCCGUGCaucACAUCGGCGAc -3'
miRNA:   3'- ugGACA-UGGCGGCAUG---UGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 82675 0.71 0.846102
Target:  5'- aACCUGaACCGgUGUGCACAUCG-CAGg -3'
miRNA:   3'- -UGGACaUGGCgGCAUGUGUGGCuGUU- -5'
10584 5' -55.4 NC_002687.1 + 72657 0.71 0.861145
Target:  5'- -aCUGUACCG-UGUAcCACGCCGAUAGa -3'
miRNA:   3'- ugGACAUGGCgGCAU-GUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 325767 0.71 0.867668
Target:  5'- gGCgUGUAuugcucuCCGCCGU-UGCACCGACAGc -3'
miRNA:   3'- -UGgACAU-------GGCGGCAuGUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 332055 0.7 0.875424
Target:  5'- gACCUGUGCCGgaUCGUgggucguggaGC-CACCGACAc -3'
miRNA:   3'- -UGGACAUGGC--GGCA----------UGuGUGGCUGUu -5'
10584 5' -55.4 NC_002687.1 + 315824 0.7 0.888899
Target:  5'- cGCCggGUGCCGCCGccGCAC-CCGAa-- -3'
miRNA:   3'- -UGGa-CAUGGCGGCa-UGUGuGGCUguu -5'
10584 5' -55.4 NC_002687.1 + 83767 0.7 0.888899
Target:  5'- gACCgcc-CCGUCGUuCACACCGACGGu -3'
miRNA:   3'- -UGGacauGGCGGCAuGUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 65182 0.7 0.895325
Target:  5'- uUCUgGUACCGCUGUgucauGgACACCGGCGAc -3'
miRNA:   3'- uGGA-CAUGGCGGCA-----UgUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 24060 0.7 0.895325
Target:  5'- gGCCUGUcccACUGCC-UGCACuCCGACu- -3'
miRNA:   3'- -UGGACA---UGGCGGcAUGUGuGGCUGuu -5'
10584 5' -55.4 NC_002687.1 + 79508 0.7 0.901539
Target:  5'- -aCUGUACCG-CGUACGCGuCCGAUu- -3'
miRNA:   3'- ugGACAUGGCgGCAUGUGU-GGCUGuu -5'
10584 5' -55.4 NC_002687.1 + 5046 0.7 0.907537
Target:  5'- -gCUGUucuCUGCCaauUACGCACCGACAGu -3'
miRNA:   3'- ugGACAu--GGCGGc--AUGUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 50987 0.69 0.924219
Target:  5'- -aCUGUACUGCUGUAUACugcuCCGAgAGc -3'
miRNA:   3'- ugGACAUGGCGGCAUGUGu---GGCUgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.