miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10584 5' -55.4 NC_002687.1 + 5046 0.7 0.907537
Target:  5'- -gCUGUucuCUGCCaauUACGCACCGACAGu -3'
miRNA:   3'- ugGACAu--GGCGGc--AUGUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 24060 0.7 0.895325
Target:  5'- gGCCUGUcccACUGCC-UGCACuCCGACu- -3'
miRNA:   3'- -UGGACA---UGGCGGcAUGUGuGGCUGuu -5'
10584 5' -55.4 NC_002687.1 + 28982 0.66 0.982847
Target:  5'- cACCg--GCCGCCGaGCACcuGCCGAg-- -3'
miRNA:   3'- -UGGacaUGGCGGCaUGUG--UGGCUguu -5'
10584 5' -55.4 NC_002687.1 + 47953 0.67 0.962456
Target:  5'- uCCgcGUACUGCUGUGCAaaugcuGCCGACGGu -3'
miRNA:   3'- uGGa-CAUGGCGGCAUGUg-----UGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 50101 0.69 0.924219
Target:  5'- -aCUGUACUGCUGUAUACugcuCCGAgAGc -3'
miRNA:   3'- ugGACAUGGCGGCAUGUGu---GGCUgUU- -5'
10584 5' -55.4 NC_002687.1 + 50987 0.69 0.924219
Target:  5'- -aCUGUACUGCUGUAUACugcuCCGAgAGc -3'
miRNA:   3'- ugGACAUGGCGGCAUGUGu---GGCUgUU- -5'
10584 5' -55.4 NC_002687.1 + 65182 0.7 0.895325
Target:  5'- uUCUgGUACCGCUGUgucauGgACACCGGCGAc -3'
miRNA:   3'- uGGA-CAUGGCGGCA-----UgUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 72657 0.71 0.861145
Target:  5'- -aCUGUACCG-UGUAcCACGCCGAUAGa -3'
miRNA:   3'- ugGACAUGGCgGCAU-GUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 72914 0.72 0.788146
Target:  5'- cGCCgccGCCGCCG-ACACACCGcCGAg -3'
miRNA:   3'- -UGGacaUGGCGGCaUGUGUGGCuGUU- -5'
10584 5' -55.4 NC_002687.1 + 79508 0.7 0.901539
Target:  5'- -aCUGUACCG-CGUACGCGuCCGAUu- -3'
miRNA:   3'- ugGACAUGGCgGCAUGUGU-GGCUGuu -5'
10584 5' -55.4 NC_002687.1 + 82675 0.71 0.846102
Target:  5'- aACCUGaACCGgUGUGCACAUCG-CAGg -3'
miRNA:   3'- -UGGACaUGGCgGCAUGUGUGGCuGUU- -5'
10584 5' -55.4 NC_002687.1 + 83767 0.7 0.888899
Target:  5'- gACCgcc-CCGUCGUuCACACCGACGGu -3'
miRNA:   3'- -UGGacauGGCGGCAuGUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 85522 0.66 0.984637
Target:  5'- gGCUUGUugUGCCGcUGCGCuACgGACc- -3'
miRNA:   3'- -UGGACAugGCGGC-AUGUG-UGgCUGuu -5'
10584 5' -55.4 NC_002687.1 + 98003 0.66 0.97653
Target:  5'- cACCcgucggUGUcACCGCCG-ACACgguGCCGGCAc -3'
miRNA:   3'- -UGG------ACA-UGGCGGCaUGUG---UGGCUGUu -5'
10584 5' -55.4 NC_002687.1 + 128808 0.66 0.97653
Target:  5'- -gUUGUGCCGCCGccuccACGCACCGu--- -3'
miRNA:   3'- ugGACAUGGCGGCa----UGUGUGGCuguu -5'
10584 5' -55.4 NC_002687.1 + 133003 0.67 0.973318
Target:  5'- aGCCUGUcggaaauagacucuACCGuuGcuUACGCCGACGu -3'
miRNA:   3'- -UGGACA--------------UGGCggCauGUGUGGCUGUu -5'
10584 5' -55.4 NC_002687.1 + 136702 0.66 0.980903
Target:  5'- uCCUGUucuucAUCGUCGUGCGCA-UGACAAc -3'
miRNA:   3'- uGGACA-----UGGCGGCAUGUGUgGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 137629 0.66 0.982847
Target:  5'- cACCUGUACC-UCGUGCucgaguACGCCGGa-- -3'
miRNA:   3'- -UGGACAUGGcGGCAUG------UGUGGCUguu -5'
10584 5' -55.4 NC_002687.1 + 140392 0.67 0.965653
Target:  5'- uGCCUGUGUCuCaCGUACACAuauCCGACGAc -3'
miRNA:   3'- -UGGACAUGGcG-GCAUGUGU---GGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 155518 0.66 0.984637
Target:  5'- --aUGUgcacACCGCCGUAgACACCG-CGu -3'
miRNA:   3'- uggACA----UGGCGGCAUgUGUGGCuGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.