miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10587 5' -55.5 NC_002687.1 + 328812 0.73 0.783041
Target:  5'- gCUGacaUCGGagguGGUGAGGAC-AGCGGGGu -3'
miRNA:   3'- -GAC---AGUCgu--UCGCUCCUGuUCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 325355 0.73 0.765231
Target:  5'- -aGUgGGCGAG-GaAGGGCGAGCGGGa -3'
miRNA:   3'- gaCAgUCGUUCgC-UCCUGUUCGCCCc -5'
10587 5' -55.5 NC_002687.1 + 325029 1.11 0.005528
Target:  5'- uCUGUCAGCAAGCGAGGACAAGCGGGGg -3'
miRNA:   3'- -GACAGUCGUUCGCUCCUGUUCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 324971 0.73 0.765231
Target:  5'- -aGUgGGCGAG-GaAGGGCGAGCGGGa -3'
miRNA:   3'- gaCAgUCGUUCgC-UCCUGUUCGCCCc -5'
10587 5' -55.5 NC_002687.1 + 324645 1.11 0.005528
Target:  5'- uCUGUCAGCAAGCGAGGACAAGCGGGGg -3'
miRNA:   3'- -GACAGUCGUUCGCUCCUGUUCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 324588 0.73 0.765231
Target:  5'- -aGUgGGCGAG-GaAGGGCGAGCGGGa -3'
miRNA:   3'- gaCAgUCGUUCgC-UCCUGUUCGCCCc -5'
10587 5' -55.5 NC_002687.1 + 324262 1.11 0.005528
Target:  5'- uCUGUCAGCAAGCGAGGACAAGCGGGGg -3'
miRNA:   3'- -GACAGUCGUUCGCUCCUGUUCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 324191 0.66 0.986378
Target:  5'- ----gGGCGAGCGAGauCGGGCGGGc -3'
miRNA:   3'- gacagUCGUUCGCUCcuGUUCGCCCc -5'
10587 5' -55.5 NC_002687.1 + 323878 1.11 0.005528
Target:  5'- uCUGUCAGCAAGCGAGGACAAGCGGGGg -3'
miRNA:   3'- -GACAGUCGUUCGCUCCUGUUCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 320097 0.72 0.816301
Target:  5'- aUGUCAGagaggauCAAGCGAGGACuGGUGGa- -3'
miRNA:   3'- gACAGUC-------GUUCGCUCCUGuUCGCCcc -5'
10587 5' -55.5 NC_002687.1 + 316020 0.67 0.976783
Target:  5'- aUGgu-GCcGGUGGGGACG-GUGGGGa -3'
miRNA:   3'- gACaguCGuUCGCUCCUGUuCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 309499 0.66 0.984758
Target:  5'- -gGUC-GUGAGCGuGGugGA-CGGGGa -3'
miRNA:   3'- gaCAGuCGUUCGCuCCugUUcGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 308863 0.75 0.690334
Target:  5'- gCUGcUCGGU-GGUGGGGGCGucAGCGGGGg -3'
miRNA:   3'- -GAC-AGUCGuUCGCUCCUGU--UCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 304929 0.66 0.986378
Target:  5'- uUGUUGGCgAAGCuGAGGACGAGCc--- -3'
miRNA:   3'- gACAGUCG-UUCG-CUCCUGUUCGcccc -5'
10587 5' -55.5 NC_002687.1 + 303347 0.66 0.981084
Target:  5'- -aGUUAGCGagAGCGAGGu----CGGGGa -3'
miRNA:   3'- gaCAGUCGU--UCGCUCCuguucGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 302692 0.66 0.982996
Target:  5'- -gGUCAGCucGGgGAGGGCGAaauuugguuucGCaGGGa -3'
miRNA:   3'- gaCAGUCGu-UCgCUCCUGUU-----------CGcCCC- -5'
10587 5' -55.5 NC_002687.1 + 301546 0.66 0.984758
Target:  5'- -gGUgAGCcucgacguacAGGCGAGGugccucggucuGCAAGCGGGc -3'
miRNA:   3'- gaCAgUCG----------UUCGCUCC-----------UGUUCGCCCc -5'
10587 5' -55.5 NC_002687.1 + 299498 0.66 0.982996
Target:  5'- -gGUCGGCAAG-GuGGuCAAGCGGc- -3'
miRNA:   3'- gaCAGUCGUUCgCuCCuGUUCGCCcc -5'
10587 5' -55.5 NC_002687.1 + 281847 0.67 0.974382
Target:  5'- cCUG--AGCAGGC-AGGGCGGGCGcgaGGGa -3'
miRNA:   3'- -GACagUCGUUCGcUCCUGUUCGC---CCC- -5'
10587 5' -55.5 NC_002687.1 + 281791 0.7 0.897108
Target:  5'- gUGUgGGaacGGCGGGGGCAGGggcCGGGGc -3'
miRNA:   3'- gACAgUCgu-UCGCUCCUGUUC---GCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.