Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10588 | 5' | -55.4 | NC_002687.1 | + | 5046 | 0.7 | 0.907537 |
Target: 5'- -gCUGUucuCUGCCaauUACGCACCGACAGu -3' miRNA: 3'- ugGACAu--GGCGGc--AUGUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 24060 | 0.7 | 0.895325 |
Target: 5'- gGCCUGUcccACUGCC-UGCACuCCGACu- -3' miRNA: 3'- -UGGACA---UGGCGGcAUGUGuGGCUGuu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 28982 | 0.66 | 0.982847 |
Target: 5'- cACCg--GCCGCCGaGCACcuGCCGAg-- -3' miRNA: 3'- -UGGacaUGGCGGCaUGUG--UGGCUguu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 47953 | 0.67 | 0.962456 |
Target: 5'- uCCgcGUACUGCUGUGCAaaugcuGCCGACGGu -3' miRNA: 3'- uGGa-CAUGGCGGCAUGUg-----UGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 50101 | 0.69 | 0.924219 |
Target: 5'- -aCUGUACUGCUGUAUACugcuCCGAgAGc -3' miRNA: 3'- ugGACAUGGCGGCAUGUGu---GGCUgUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 50987 | 0.69 | 0.924219 |
Target: 5'- -aCUGUACUGCUGUAUACugcuCCGAgAGc -3' miRNA: 3'- ugGACAUGGCGGCAUGUGu---GGCUgUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 65182 | 0.7 | 0.895325 |
Target: 5'- uUCUgGUACCGCUGUgucauGgACACCGGCGAc -3' miRNA: 3'- uGGA-CAUGGCGGCA-----UgUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 72657 | 0.71 | 0.861145 |
Target: 5'- -aCUGUACCG-UGUAcCACGCCGAUAGa -3' miRNA: 3'- ugGACAUGGCgGCAU-GUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 72914 | 0.72 | 0.788146 |
Target: 5'- cGCCgccGCCGCCG-ACACACCGcCGAg -3' miRNA: 3'- -UGGacaUGGCGGCaUGUGUGGCuGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 79508 | 0.7 | 0.901539 |
Target: 5'- -aCUGUACCG-CGUACGCGuCCGAUu- -3' miRNA: 3'- ugGACAUGGCgGCAUGUGU-GGCUGuu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 82675 | 0.71 | 0.846102 |
Target: 5'- aACCUGaACCGgUGUGCACAUCG-CAGg -3' miRNA: 3'- -UGGACaUGGCgGCAUGUGUGGCuGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 83767 | 0.7 | 0.888899 |
Target: 5'- gACCgcc-CCGUCGUuCACACCGACGGu -3' miRNA: 3'- -UGGacauGGCGGCAuGUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 85522 | 0.66 | 0.984637 |
Target: 5'- gGCUUGUugUGCCGcUGCGCuACgGACc- -3' miRNA: 3'- -UGGACAugGCGGC-AUGUG-UGgCUGuu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 98003 | 0.66 | 0.97653 |
Target: 5'- cACCcgucggUGUcACCGCCG-ACACgguGCCGGCAc -3' miRNA: 3'- -UGG------ACA-UGGCGGCaUGUG---UGGCUGUu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 128808 | 0.66 | 0.97653 |
Target: 5'- -gUUGUGCCGCCGccuccACGCACCGu--- -3' miRNA: 3'- ugGACAUGGCGGCa----UGUGUGGCuguu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 133003 | 0.67 | 0.973318 |
Target: 5'- aGCCUGUcggaaauagacucuACCGuuGcuUACGCCGACGu -3' miRNA: 3'- -UGGACA--------------UGGCggCauGUGUGGCUGUu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 136702 | 0.66 | 0.980903 |
Target: 5'- uCCUGUucuucAUCGUCGUGCGCA-UGACAAc -3' miRNA: 3'- uGGACA-----UGGCGGCAUGUGUgGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 137629 | 0.66 | 0.982847 |
Target: 5'- cACCUGUACC-UCGUGCucgaguACGCCGGa-- -3' miRNA: 3'- -UGGACAUGGcGGCAUG------UGUGGCUguu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 140392 | 0.67 | 0.965653 |
Target: 5'- uGCCUGUGUCuCaCGUACACAuauCCGACGAc -3' miRNA: 3'- -UGGACAUGGcG-GCAUGUGU---GGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 155518 | 0.66 | 0.984637 |
Target: 5'- --aUGUgcacACCGCCGUAgACACCG-CGu -3' miRNA: 3'- uggACA----UGGCGGCAUgUGUGGCuGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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