Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10588 | 5' | -55.4 | NC_002687.1 | + | 323640 | 1.06 | 0.010653 |
Target: 5'- gACCUGUACCGCCGUACACACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 325159 | 0.98 | 0.034158 |
Target: 5'- gGCCUGUACCGCCGUACcCACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGuGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 315824 | 0.7 | 0.888899 |
Target: 5'- cGCCggGUGCCGCCGccGCAC-CCGAa-- -3' miRNA: 3'- -UGGa-CAUGGCGGCa-UGUGuGGCUguu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 136702 | 0.66 | 0.980903 |
Target: 5'- uCCUGUucuucAUCGUCGUGCGCA-UGACAAc -3' miRNA: 3'- uGGACA-----UGGCGGCAUGUGUgGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 65182 | 0.7 | 0.895325 |
Target: 5'- uUCUgGUACCGCUGUgucauGgACACCGGCGAc -3' miRNA: 3'- uGGA-CAUGGCGGCA-----UgUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 324791 | 1.06 | 0.010653 |
Target: 5'- gACCUGUACCGCCGUACACACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 24060 | 0.7 | 0.895325 |
Target: 5'- gGCCUGUcccACUGCC-UGCACuCCGACu- -3' miRNA: 3'- -UGGACA---UGGCGGcAUGUGuGGCUGuu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 140392 | 0.67 | 0.965653 |
Target: 5'- uGCCUGUGUCuCaCGUACACAuauCCGACGAc -3' miRNA: 3'- -UGGACAUGGcG-GCAUGUGU---GGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 317456 | 0.67 | 0.971463 |
Target: 5'- cACCagGUuCCGCCGccacaugGC-CACCGACAAc -3' miRNA: 3'- -UGGa-CAuGGCGGCa------UGuGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 324407 | 1.06 | 0.010653 |
Target: 5'- gACCUGUACCGCCGUACACACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 137629 | 0.66 | 0.982847 |
Target: 5'- cACCUGUACC-UCGUGCucgaguACGCCGGa-- -3' miRNA: 3'- -UGGACAUGGcGGCAUG------UGUGGCUguu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 324024 | 1.06 | 0.010653 |
Target: 5'- gACCUGUACCGCCGUACACACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 203552 | 0.68 | 0.943375 |
Target: 5'- gGCCUggucuaacGUGCUcagGUCGUAUGCACCGGCGg -3' miRNA: 3'- -UGGA--------CAUGG---CGGCAUGUGUGGCUGUu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 272621 | 0.68 | 0.951642 |
Target: 5'- cCCUG-ACCGUCGaugACGCCGGCGAg -3' miRNA: 3'- uGGACaUGGCGGCaugUGUGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 47953 | 0.67 | 0.962456 |
Target: 5'- uCCgcGUACUGCUGUGCAaaugcuGCCGACGGu -3' miRNA: 3'- uGGa-CAUGGCGGCAUGUg-----UGGCUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 219185 | 0.67 | 0.965653 |
Target: 5'- uCUUGUACUGCUGUACAUACaaaaGAgAGu -3' miRNA: 3'- uGGACAUGGCGGCAUGUGUGg---CUgUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 276160 | 0.67 | 0.965653 |
Target: 5'- aACgUGaagGCCGCgGU-CGCGCCGGCGu -3' miRNA: 3'- -UGgACa--UGGCGgCAuGUGUGGCUGUu -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 324354 | 0.67 | 0.974086 |
Target: 5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3' miRNA: 3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 323970 | 0.67 | 0.974086 |
Target: 5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3' miRNA: 3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5' |
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10588 | 5' | -55.4 | NC_002687.1 | + | 28982 | 0.66 | 0.982847 |
Target: 5'- cACCg--GCCGCCGaGCACcuGCCGAg-- -3' miRNA: 3'- -UGGacaUGGCGGCaUGUG--UGGCUguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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