Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10592 | 5' | -52 | NC_002687.1 | + | 114628 | 0.68 | 0.995649 |
Target: 5'- aGCCGACGuccccgugauCGACGGGCGCG--AUUGa -3' miRNA: 3'- -UGGCUGUuu--------GCUGCCUGUGCggUAAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 39145 | 0.68 | 0.995649 |
Target: 5'- cGCCGGCuGugGGCaGGACGagguaGUCGUUGu -3' miRNA: 3'- -UGGCUGuUugCUG-CCUGUg----CGGUAAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 109380 | 0.68 | 0.994971 |
Target: 5'- cGCCGACAAGaucaGACGcaaGACGCGgCAgUUGg -3' miRNA: 3'- -UGGCUGUUUg---CUGC---CUGUGCgGU-AAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 296703 | 0.68 | 0.994971 |
Target: 5'- gGuuGACGAGCGAuCGGGCAUGguuuccgaCAUUGa -3' miRNA: 3'- -UggCUGUUUGCU-GCCUGUGCg-------GUAAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 8865 | 0.68 | 0.994208 |
Target: 5'- uCCGgaaGCGuucGCGGCGGAC-CGCCGUa- -3' miRNA: 3'- uGGC---UGUu--UGCUGCCUGuGCGGUAac -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 208829 | 0.68 | 0.994208 |
Target: 5'- gACCGu--GACGACGGugGUGCCGa-- -3' miRNA: 3'- -UGGCuguUUGCUGCCugUGCGGUaac -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 259438 | 0.68 | 0.994208 |
Target: 5'- cGCCGGCGccAACGACacguauguGGugcaGCACGCCAUc- -3' miRNA: 3'- -UGGCUGU--UUGCUG--------CC----UGUGCGGUAac -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 123016 | 0.68 | 0.994208 |
Target: 5'- gGCCG-CGAuuuccACGAgCGGaaGCAUGCCGUUGu -3' miRNA: 3'- -UGGCuGUU-----UGCU-GCC--UGUGCGGUAAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 40056 | 0.68 | 0.994127 |
Target: 5'- cGCCGACAGgacAUGGCgucgccgGGGCugGCUcgUGa -3' miRNA: 3'- -UGGCUGUU---UGCUG-------CCUGugCGGuaAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 224095 | 0.68 | 0.993962 |
Target: 5'- uGCUGGCGGACGuucgggacgcggugGCGGugGCGCUg--- -3' miRNA: 3'- -UGGCUGUUUGC--------------UGCCugUGCGGuaac -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 306499 | 0.68 | 0.993356 |
Target: 5'- cACCGACAacAACGAgaaggcauuUGGACAC-CUGUUGg -3' miRNA: 3'- -UGGCUGU--UUGCU---------GCCUGUGcGGUAAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 169462 | 0.68 | 0.993356 |
Target: 5'- aGCUGACcGAuCGuCGaGACGCGCCGUUc -3' miRNA: 3'- -UGGCUGuUU-GCuGC-CUGUGCGGUAAc -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 224134 | 0.68 | 0.993356 |
Target: 5'- cGCUGGCGGugG-CGGugGCGCUg--- -3' miRNA: 3'- -UGGCUGUUugCuGCCugUGCGGuaac -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 200548 | 0.68 | 0.993356 |
Target: 5'- aGCCGACGucGACGcucggGCGGAagacggcauCACGCCuUUGa -3' miRNA: 3'- -UGGCUGU--UUGC-----UGCCU---------GUGCGGuAAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 79612 | 0.69 | 0.990182 |
Target: 5'- gGCCGACG--UGACGcGCACGUCGUa- -3' miRNA: 3'- -UGGCUGUuuGCUGCcUGUGCGGUAac -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 307816 | 0.69 | 0.990182 |
Target: 5'- cACUGAUggGGACGGCGGugACGgCggUGa -3' miRNA: 3'- -UGGCUG--UUUGCUGCCugUGCgGuaAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 321907 | 0.7 | 0.985927 |
Target: 5'- gACCGACAGAuCGACcaACGCGCUAa-- -3' miRNA: 3'- -UGGCUGUUU-GCUGccUGUGCGGUaac -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 296290 | 0.7 | 0.982388 |
Target: 5'- gAUCGACGcuACGACGG--GCGUCGUUGg -3' miRNA: 3'- -UGGCUGUu-UGCUGCCugUGCGGUAAC- -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 255337 | 0.7 | 0.982388 |
Target: 5'- aGCCGAC--ACGAUGGcGCAgGCCAg-- -3' miRNA: 3'- -UGGCUGuuUGCUGCC-UGUgCGGUaac -5' |
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10592 | 5' | -52 | NC_002687.1 | + | 30414 | 0.7 | 0.982388 |
Target: 5'- aGCCGGCcuACGAggaggUGGACuACGCCAa-- -3' miRNA: 3'- -UGGCUGuuUGCU-----GCCUG-UGCGGUaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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