Results 21 - 40 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 225626 | 0.68 | 0.787102 |
Target: 5'- gGACGCACCgguGGGCGGucgAGCuGGAGcCGGa -3' miRNA: 3'- -UUGCGUGG---CCCGCC---UCG-UCUCuGUCg -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 173487 | 0.68 | 0.804013 |
Target: 5'- aGGCGCaaguggagGCgGaGGCGGAGguGGGACuggaGGCg -3' miRNA: 3'- -UUGCG--------UGgC-CCGCCUCguCUCUG----UCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 309888 | 0.68 | 0.804013 |
Target: 5'- -uCGCuaUGGGUGGGGCGGugGGGCAGUg -3' miRNA: 3'- uuGCGugGCCCGCCUCGUC--UCUGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 172294 | 0.68 | 0.804013 |
Target: 5'- gAACGguggGGGCGGGGguGGGACAGg -3' miRNA: 3'- -UUGCguggCCCGCCUCguCUCUGUCg -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 280959 | 0.68 | 0.812268 |
Target: 5'- gGGgGC-CUGGGUGGcGGCAGcGGCGGCc -3' miRNA: 3'- -UUgCGuGGCCCGCC-UCGUCuCUGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 173599 | 0.68 | 0.820379 |
Target: 5'- nGAgGCGg-GGGCGGAgGCGGAGGCGGa -3' miRNA: 3'- -UUgCGUggCCCGCCU-CGUCUCUGUCg -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 209849 | 0.68 | 0.820379 |
Target: 5'- gAACGCGCCuGGCGcGAGUGGAGGu--- -3' miRNA: 3'- -UUGCGUGGcCCGC-CUCGUCUCUgucg -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 283204 | 0.68 | 0.82834 |
Target: 5'- --aGCACCaGGCGcGGCGGGGGCcGUg -3' miRNA: 3'- uugCGUGGcCCGCcUCGUCUCUGuCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 145325 | 0.68 | 0.82834 |
Target: 5'- --gGCACCGaGGUGGcugacGCGGAcaaGGCGGCg -3' miRNA: 3'- uugCGUGGC-CCGCCu----CGUCU---CUGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 305210 | 0.68 | 0.82834 |
Target: 5'- --gGCACCGGaCGG-GCAGAGGCu-- -3' miRNA: 3'- uugCGUGGCCcGCCuCGUCUCUGucg -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 11301 | 0.67 | 0.836144 |
Target: 5'- -uUGCcgAUCGGGCGGucAGCAGcaGCAGCa -3' miRNA: 3'- uuGCG--UGGCCCGCC--UCGUCucUGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 268104 | 0.67 | 0.836144 |
Target: 5'- cGGgGCugCGGGgGGGGgGGGGAgGGg -3' miRNA: 3'- -UUgCGugGCCCgCCUCgUCUCUgUCg -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 291748 | 0.67 | 0.836144 |
Target: 5'- gAGCGC-CCGGGCa-AGCAGcGACcGCa -3' miRNA: 3'- -UUGCGuGGCCCGccUCGUCuCUGuCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 65948 | 0.67 | 0.858557 |
Target: 5'- cACGUACaCGGGgGGAaucGAGACAGUc -3' miRNA: 3'- uUGCGUG-GCCCgCCUcguCUCUGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 216830 | 0.67 | 0.865676 |
Target: 5'- cACGCACCGGGUuccGuCGuGGACAGCa -3' miRNA: 3'- uUGCGUGGCCCGccuC-GUcUCUGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 145483 | 0.67 | 0.87261 |
Target: 5'- cGCGCGCCucGGC-GAGCAGAu-CGGCa -3' miRNA: 3'- uUGCGUGGc-CCGcCUCGUCUcuGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 313431 | 0.67 | 0.87261 |
Target: 5'- -uCGUAaaagaCGGGCaGAaauucugaaGCAGAGGCGGCg -3' miRNA: 3'- uuGCGUg----GCCCGcCU---------CGUCUCUGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 226808 | 0.66 | 0.885908 |
Target: 5'- --gGUGCCGguGGCGGuGGCGGuGGCGGUg -3' miRNA: 3'- uugCGUGGC--CCGCC-UCGUCuCUGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 25413 | 0.66 | 0.885908 |
Target: 5'- gGAUGCAC--GGCGGuGCAGGaguaccgcuacGACGGCg -3' miRNA: 3'- -UUGCGUGgcCCGCCuCGUCU-----------CUGUCG- -5' |
|||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 10314 | 0.66 | 0.898418 |
Target: 5'- --aGCAgCaGuGGCGGcGGCAGuGGCGGCg -3' miRNA: 3'- uugCGUgG-C-CCGCC-UCGUCuCUGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home