miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10593 3' -59.6 NC_002687.1 + 331014 1.09 0.003046
Target:  5'- gAACGCACCGGGCGGAGCAGAGACAGCu -3'
miRNA:   3'- -UUGCGUGGCCCGCCUCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 201877 0.8 0.225986
Target:  5'- cGCGCGCuCGGGCGGGGCAGGcGGguGUg -3'
miRNA:   3'- uUGCGUG-GCCCGCCUCGUCU-CUguCG- -5'
10593 3' -59.6 NC_002687.1 + 200963 0.78 0.289089
Target:  5'- uGCGCGCuCGGGCGGGGCAGgcGGGCGuGUu -3'
miRNA:   3'- uUGCGUG-GCCCGCCUCGUC--UCUGU-CG- -5'
10593 3' -59.6 NC_002687.1 + 224161 0.73 0.516411
Target:  5'- uGGCGCugGCgGuGGCGGuGGCGGGGGCAGUg -3'
miRNA:   3'- -UUGCG--UGgC-CCGCC-UCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 276386 0.73 0.525599
Target:  5'- gAGCGCACC---CGGGGUAGAGGCAGUc -3'
miRNA:   3'- -UUGCGUGGcccGCCUCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 281936 0.73 0.544154
Target:  5'- --aGCAUCGgucgcGGCaGGAGCAGGGGCGGUg -3'
miRNA:   3'- uugCGUGGC-----CCG-CCUCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 58146 0.72 0.5828
Target:  5'- aGAUGCAaaccacccucucucaCGuGGCGGAG-AGAGACAGCg -3'
miRNA:   3'- -UUGCGUg--------------GC-CCGCCUCgUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 173571 0.7 0.686945
Target:  5'- aGGCGCAggUgGaGGCGGAgGCGGAGGCGGa -3'
miRNA:   3'- -UUGCGU--GgC-CCGCCU-CGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 18672 0.7 0.686945
Target:  5'- -cCGCcCCcgaagcagGGGCaGGAGCAGGGGCAGg -3'
miRNA:   3'- uuGCGuGG--------CCCG-CCUCGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 11348 0.7 0.715158
Target:  5'- --aGCAgCGGGUgucGGAGCAGcaGCAGCa -3'
miRNA:   3'- uugCGUgGCCCG---CCUCGUCucUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 257381 0.7 0.715158
Target:  5'- cGACGCGCuCGGGCcaguguguaucGGAGguGuG-CAGCa -3'
miRNA:   3'- -UUGCGUG-GCCCG-----------CCUCguCuCuGUCG- -5'
10593 3' -59.6 NC_002687.1 + 278960 0.7 0.724448
Target:  5'- --aGCGCaGGGgGGGGCAGAccCAGCg -3'
miRNA:   3'- uugCGUGgCCCgCCUCGUCUcuGUCG- -5'
10593 3' -59.6 NC_002687.1 + 200557 0.69 0.742812
Target:  5'- cGACGC-UCGGGCGGA----AGACGGCa -3'
miRNA:   3'- -UUGCGuGGCCCGCCUcgucUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 167568 0.69 0.75187
Target:  5'- cGACGCACCaucuccaGCGGGGUGGAGACGu- -3'
miRNA:   3'- -UUGCGUGGcc-----CGCCUCGUCUCUGUcg -5'
10593 3' -59.6 NC_002687.1 + 88931 0.69 0.760835
Target:  5'- uGCGCGCUGGcGCGGGccGCgAGuucGGCGGCa -3'
miRNA:   3'- uUGCGUGGCC-CGCCU--CG-UCu--CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 10371 0.69 0.760835
Target:  5'- aGugGCugCGGcGaCGGGGguGgagaAGGCAGCg -3'
miRNA:   3'- -UugCGugGCC-C-GCCUCguC----UCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 316021 0.69 0.769701
Target:  5'- gAugGUGCCGGuGgGGAcgGUGGGGACGGUg -3'
miRNA:   3'- -UugCGUGGCC-CgCCU--CGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 225582 0.69 0.778459
Target:  5'- --gGgGCCGGaGCGGGGgguggugcUGGAGACGGCg -3'
miRNA:   3'- uugCgUGGCC-CGCCUC--------GUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 224907 0.69 0.778459
Target:  5'- gGugGCAUgugGuGGCGGAGgaGGAGACAGUg -3'
miRNA:   3'- -UugCGUGg--C-CCGCCUCg-UCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 214982 0.68 0.787102
Target:  5'- -uCGaCACCGG-CGGGGCcGAGgGCGGCg -3'
miRNA:   3'- uuGC-GUGGCCcGCCUCGuCUC-UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.