miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10593 3' -59.6 NC_002687.1 + 10314 0.66 0.898418
Target:  5'- --aGCAgCaGuGGCGGcGGCAGuGGCGGCg -3'
miRNA:   3'- uugCGUgG-C-CCGCC-UCGUCuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 10371 0.69 0.760835
Target:  5'- aGugGCugCGGcGaCGGGGguGgagaAGGCAGCg -3'
miRNA:   3'- -UugCGugGCC-C-GCCUCguC----UCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 10471 0.66 0.90437
Target:  5'- gGugGCACauCGGGUgccgugucGGAuGCGGGGACGGa -3'
miRNA:   3'- -UugCGUG--GCCCG--------CCU-CGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 11301 0.67 0.836144
Target:  5'- -uUGCcgAUCGGGCGGucAGCAGcaGCAGCa -3'
miRNA:   3'- uuGCG--UGGCCCGCC--UCGUCucUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 11348 0.7 0.715158
Target:  5'- --aGCAgCGGGUgucGGAGCAGcaGCAGCa -3'
miRNA:   3'- uugCGUgGCCCG---CCUCGUCucUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 11401 0.66 0.910117
Target:  5'- uAGCaGCAgCGGuaGCGGuggcAGCAGcGGCAGCa -3'
miRNA:   3'- -UUG-CGUgGCC--CGCC----UCGUCuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 18672 0.7 0.686945
Target:  5'- -cCGCcCCcgaagcagGGGCaGGAGCAGGGGCAGg -3'
miRNA:   3'- uuGCGuGG--------CCCG-CCUCGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 25413 0.66 0.885908
Target:  5'- gGAUGCAC--GGCGGuGCAGGaguaccgcuacGACGGCg -3'
miRNA:   3'- -UUGCGUGgcCCGCCuCGUCU-----------CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 58146 0.72 0.5828
Target:  5'- aGAUGCAaaccacccucucucaCGuGGCGGAG-AGAGACAGCg -3'
miRNA:   3'- -UUGCGUg--------------GC-CCGCCUCgUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 65948 0.67 0.858557
Target:  5'- cACGUACaCGGGgGGAaucGAGACAGUc -3'
miRNA:   3'- uUGCGUG-GCCCgCCUcguCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 88931 0.69 0.760835
Target:  5'- uGCGCGCUGGcGCGGGccGCgAGuucGGCGGCa -3'
miRNA:   3'- uUGCGUGGCC-CGCCU--CG-UCu--CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 145325 0.68 0.82834
Target:  5'- --gGCACCGaGGUGGcugacGCGGAcaaGGCGGCg -3'
miRNA:   3'- uugCGUGGC-CCGCCu----CGUCU---CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 145483 0.67 0.87261
Target:  5'- cGCGCGCCucGGC-GAGCAGAu-CGGCa -3'
miRNA:   3'- uUGCGUGGc-CCGcCUCGUCUcuGUCG- -5'
10593 3' -59.6 NC_002687.1 + 167568 0.69 0.75187
Target:  5'- cGACGCACCaucuccaGCGGGGUGGAGACGu- -3'
miRNA:   3'- -UUGCGUGGcc-----CGCCUCGUCUCUGUcg -5'
10593 3' -59.6 NC_002687.1 + 172294 0.68 0.804013
Target:  5'- gAACGguggGGGCGGGGguGGGACAGg -3'
miRNA:   3'- -UUGCguggCCCGCCUCguCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 173487 0.68 0.804013
Target:  5'- aGGCGCaaguggagGCgGaGGCGGAGguGGGACuggaGGCg -3'
miRNA:   3'- -UUGCG--------UGgC-CCGCCUCguCUCUG----UCG- -5'
10593 3' -59.6 NC_002687.1 + 173571 0.7 0.686945
Target:  5'- aGGCGCAggUgGaGGCGGAgGCGGAGGCGGa -3'
miRNA:   3'- -UUGCGU--GgC-CCGCCU-CGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 173599 0.68 0.820379
Target:  5'- nGAgGCGg-GGGCGGAgGCGGAGGCGGa -3'
miRNA:   3'- -UUgCGUggCCCGCCU-CGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 200557 0.69 0.742812
Target:  5'- cGACGC-UCGGGCGGA----AGACGGCa -3'
miRNA:   3'- -UUGCGuGGCCCGCCUcgucUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 200963 0.78 0.289089
Target:  5'- uGCGCGCuCGGGCGGGGCAGgcGGGCGuGUu -3'
miRNA:   3'- uUGCGUG-GCCCGCCUCGUC--UCUGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.