Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 200557 | 0.69 | 0.742812 |
Target: 5'- cGACGC-UCGGGCGGA----AGACGGCa -3' miRNA: 3'- -UUGCGuGGCCCGCCUcgucUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 173599 | 0.68 | 0.820379 |
Target: 5'- nGAgGCGg-GGGCGGAgGCGGAGGCGGa -3' miRNA: 3'- -UUgCGUggCCCGCCU-CGUCUCUGUCg -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 331014 | 1.09 | 0.003046 |
Target: 5'- gAACGCACCGGGCGGAGCAGAGACAGCu -3' miRNA: 3'- -UUGCGUGGCCCGCCUCGUCUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 201877 | 0.8 | 0.225986 |
Target: 5'- cGCGCGCuCGGGCGGGGCAGGcGGguGUg -3' miRNA: 3'- uUGCGUG-GCCCGCCUCGUCU-CUguCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 200963 | 0.78 | 0.289089 |
Target: 5'- uGCGCGCuCGGGCGGGGCAGgcGGGCGuGUu -3' miRNA: 3'- uUGCGUG-GCCCGCCUCGUC--UCUGU-CG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 224161 | 0.73 | 0.516411 |
Target: 5'- uGGCGCugGCgGuGGCGGuGGCGGGGGCAGUg -3' miRNA: 3'- -UUGCG--UGgC-CCGCC-UCGUCUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 281936 | 0.73 | 0.544154 |
Target: 5'- --aGCAUCGgucgcGGCaGGAGCAGGGGCGGUg -3' miRNA: 3'- uugCGUGGC-----CCG-CCUCGUCUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 173571 | 0.7 | 0.686945 |
Target: 5'- aGGCGCAggUgGaGGCGGAgGCGGAGGCGGa -3' miRNA: 3'- -UUGCGU--GgC-CCGCCU-CGUCUCUGUCg -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 11348 | 0.7 | 0.715158 |
Target: 5'- --aGCAgCGGGUgucGGAGCAGcaGCAGCa -3' miRNA: 3'- uugCGUgGCCCG---CCUCGUCucUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 280959 | 0.68 | 0.812268 |
Target: 5'- gGGgGC-CUGGGUGGcGGCAGcGGCGGCc -3' miRNA: 3'- -UUgCGuGGCCCGCC-UCGUCuCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 172294 | 0.68 | 0.804013 |
Target: 5'- gAACGguggGGGCGGGGguGGGACAGg -3' miRNA: 3'- -UUGCguggCCCGCCUCguCUCUGUCg -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 225626 | 0.68 | 0.787102 |
Target: 5'- gGACGCACCgguGGGCGGucgAGCuGGAGcCGGa -3' miRNA: 3'- -UUGCGUGG---CCCGCC---UCG-UCUCuGUCg -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 167568 | 0.69 | 0.75187 |
Target: 5'- cGACGCACCaucuccaGCGGGGUGGAGACGu- -3' miRNA: 3'- -UUGCGUGGcc-----CGCCUCGUCUCUGUcg -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 173487 | 0.68 | 0.804013 |
Target: 5'- aGGCGCaaguggagGCgGaGGCGGAGguGGGACuggaGGCg -3' miRNA: 3'- -UUGCG--------UGgC-CCGCCUCguCUCUG----UCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 10371 | 0.69 | 0.760835 |
Target: 5'- aGugGCugCGGcGaCGGGGguGgagaAGGCAGCg -3' miRNA: 3'- -UugCGugGCC-C-GCCUCguC----UCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 214982 | 0.68 | 0.787102 |
Target: 5'- -uCGaCACCGG-CGGGGCcGAGgGCGGCg -3' miRNA: 3'- uuGC-GUGGCCcGCCUCGuCUC-UGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 309888 | 0.68 | 0.804013 |
Target: 5'- -uCGCuaUGGGUGGGGCGGugGGGCAGUg -3' miRNA: 3'- uuGCGugGCCCGCCUCGUC--UCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 201269 | 0.66 | 0.910681 |
Target: 5'- gGACgGUACCucgaaaaacaauuauGGCGGcguaaAGCAGAGACGGUa -3' miRNA: 3'- -UUG-CGUGGc--------------CCGCC-----UCGUCUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 225582 | 0.69 | 0.778459 |
Target: 5'- --gGgGCCGGaGCGGGGgguggugcUGGAGACGGCg -3' miRNA: 3'- uugCgUGGCC-CGCCUC--------GUCUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 224907 | 0.69 | 0.778459 |
Target: 5'- gGugGCAUgugGuGGCGGAGgaGGAGACAGUg -3' miRNA: 3'- -UugCGUGg--C-CCGCCUCg-UCUCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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