miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10593 5' -55.7 NC_002687.1 + 284736 0.71 0.846841
Target:  5'- uGCACCugCUgaacGCGCCGCCUc-UGGUGc -3'
miRNA:   3'- -CGUGGugGAa---CGUGGUGGAacGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 81295 0.68 0.939599
Target:  5'- uGCAUCGCUUUGCGCCAUagCUUuaGGa- -3'
miRNA:   3'- -CGUGGUGGAACGUGGUG--GAAcgCCau -5'
10593 5' -55.7 NC_002687.1 + 107915 0.69 0.914064
Target:  5'- aCGCCACCgagaGCCACCUUGaUGGg- -3'
miRNA:   3'- cGUGGUGGaacgUGGUGGAAC-GCCau -5'
10593 5' -55.7 NC_002687.1 + 303323 0.69 0.912355
Target:  5'- uGCACUugCUUGCAUUACCcgagggguugcacgUggGCGGUGc -3'
miRNA:   3'- -CGUGGugGAACGUGGUGG--------------Aa-CGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 226543 0.7 0.876189
Target:  5'- aGCACgACCUUcaGCACUACCUcccacCGGUAg -3'
miRNA:   3'- -CGUGgUGGAA--CGUGGUGGAac---GCCAU- -5'
10593 5' -55.7 NC_002687.1 + 226729 0.7 0.876189
Target:  5'- aGCACgACCUUcaGCACUACCUcccacCGGUAg -3'
miRNA:   3'- -CGUGgUGGAA--CGUGGUGGAac---GCCAU- -5'
10593 5' -55.7 NC_002687.1 + 293827 0.7 0.869144
Target:  5'- aGCuCCGCUga-UACCACCUUGCGGc- -3'
miRNA:   3'- -CGuGGUGGaacGUGGUGGAACGCCau -5'
10593 5' -55.7 NC_002687.1 + 217942 0.7 0.861901
Target:  5'- uCGCCGCC---CGCCACCccgUUGCGGUAc -3'
miRNA:   3'- cGUGGUGGaacGUGGUGG---AACGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 163454 0.71 0.846841
Target:  5'- cGCACgGCCUggaguucaUGUAgCCGCCUUGCGaGUu -3'
miRNA:   3'- -CGUGgUGGA--------ACGU-GGUGGAACGC-CAu -5'
10593 5' -55.7 NC_002687.1 + 291662 0.68 0.939599
Target:  5'- cGCgGCCGCUggGCACCGCgCgagguaaGCGGUGa -3'
miRNA:   3'- -CG-UGGUGGaaCGUGGUG-Gaa-----CGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 102807 0.68 0.94404
Target:  5'- uGCugCGCCUgucucUGCugCAUCUgcUGCuGGUGc -3'
miRNA:   3'- -CGugGUGGA-----ACGugGUGGA--ACG-CCAU- -5'
10593 5' -55.7 NC_002687.1 + 146551 0.67 0.952269
Target:  5'- -gGCCACUUgagcgcggGCugCACCUgGCGGa- -3'
miRNA:   3'- cgUGGUGGAa-------CGugGUGGAaCGCCau -5'
10593 5' -55.7 NC_002687.1 + 99886 0.66 0.981098
Target:  5'- -gACCGCCUUGUuucccuuuucacaGCCACCUUcGCcucucacaaGGUAc -3'
miRNA:   3'- cgUGGUGGAACG-------------UGGUGGAA-CG---------CCAU- -5'
10593 5' -55.7 NC_002687.1 + 80016 0.66 0.979219
Target:  5'- uCACCACCaaggucUUGCGCCACC--GCGa-- -3'
miRNA:   3'- cGUGGUGG------AACGUGGUGGaaCGCcau -5'
10593 5' -55.7 NC_002687.1 + 296956 0.66 0.976973
Target:  5'- uCAuCCGCC-UGCugCACCggGgGGUGa -3'
miRNA:   3'- cGU-GGUGGaACGugGUGGaaCgCCAU- -5'
10593 5' -55.7 NC_002687.1 + 64879 0.66 0.974554
Target:  5'- gGCAcacCCACaucaUGCACCGCUUUGCGu-- -3'
miRNA:   3'- -CGU---GGUGga--ACGUGGUGGAACGCcau -5'
10593 5' -55.7 NC_002687.1 + 234150 0.66 0.971955
Target:  5'- -gGCCGCUUUggcacGCGCUGCCUcGCGGg- -3'
miRNA:   3'- cgUGGUGGAA-----CGUGGUGGAaCGCCau -5'
10593 5' -55.7 NC_002687.1 + 203452 0.66 0.971955
Target:  5'- uGCACCACCUcGUacccGCCGCCguaacUUGCGu-- -3'
miRNA:   3'- -CGUGGUGGAaCG----UGGUGG-----AACGCcau -5'
10593 5' -55.7 NC_002687.1 + 225223 0.66 0.96917
Target:  5'- cGUGCCgACCgugccgGCGCCGCCgcgucgGCGGc- -3'
miRNA:   3'- -CGUGG-UGGaa----CGUGGUGGaa----CGCCau -5'
10593 5' -55.7 NC_002687.1 + 159689 0.67 0.959643
Target:  5'- aGCugCACCUUuuucauggaccGCAUCACCUUGuuGa- -3'
miRNA:   3'- -CGugGUGGAA-----------CGUGGUGGAACgcCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.