miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10594 3' -55.4 NC_002687.1 + 331476 1.11 0.005829
Target:  5'- aCCACAGGCUCACCCACGAUCCACACAa -3'
miRNA:   3'- -GGUGUCCGAGUGGGUGCUAGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 331685 0.8 0.408046
Target:  5'- gUCGguGGCUCcacgACCCACGAUCCgGCACAg -3'
miRNA:   3'- -GGUguCCGAG----UGGGUGCUAGG-UGUGU- -5'
10594 3' -55.4 NC_002687.1 + 211023 0.75 0.695898
Target:  5'- aCAUAGuGCcgUCACCCAUGAcCCGCACGa -3'
miRNA:   3'- gGUGUC-CG--AGUGGGUGCUaGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 4026 0.74 0.743005
Target:  5'- cCCACGGGC--ACCCGUGAUCaCGCACGu -3'
miRNA:   3'- -GGUGUCCGagUGGGUGCUAG-GUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 41197 0.73 0.805057
Target:  5'- gCGCGGGCacuugUACCCACGGUUUACAgAg -3'
miRNA:   3'- gGUGUCCGa----GUGGGUGCUAGGUGUgU- -5'
10594 3' -55.4 NC_002687.1 + 45347 0.71 0.860209
Target:  5'- cCUugGGGCUCuucucCCCcUGGUCCGCGCc -3'
miRNA:   3'- -GGugUCCGAGu----GGGuGCUAGGUGUGu -5'
10594 3' -55.4 NC_002687.1 + 239034 0.71 0.874379
Target:  5'- gUCGguGGCcCACCgaACGAUCCGCAUg -3'
miRNA:   3'- -GGUguCCGaGUGGg-UGCUAGGUGUGu -5'
10594 3' -55.4 NC_002687.1 + 198543 0.71 0.881173
Target:  5'- aCCACGGGCUgaCGCaCgGCGAUuuGCACc -3'
miRNA:   3'- -GGUGUCCGA--GUG-GgUGCUAggUGUGu -5'
10594 3' -55.4 NC_002687.1 + 63386 0.7 0.922952
Target:  5'- cUCGCAGGCUacCACCCgucggcguGCGAgaucCCAUACGc -3'
miRNA:   3'- -GGUGUCCGA--GUGGG--------UGCUa---GGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 217969 0.7 0.922952
Target:  5'- uCCGgGGGCUCAaauuCCCACGAgcaaucgCCGCcCGc -3'
miRNA:   3'- -GGUgUCCGAGU----GGGUGCUa------GGUGuGU- -5'
10594 3' -55.4 NC_002687.1 + 94652 0.69 0.932968
Target:  5'- uCCACcGGCUCGaCCugGcgCuCACGCAa -3'
miRNA:   3'- -GGUGuCCGAGUgGGugCuaG-GUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 110472 0.69 0.932968
Target:  5'- uCCuuGGGuCUCACCCGgGAgaugUUCACACGa -3'
miRNA:   3'- -GGugUCC-GAGUGGGUgCU----AGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 275784 0.69 0.937651
Target:  5'- gCGCAGGCUCAUCgACGc-CgGCGCGa -3'
miRNA:   3'- gGUGUCCGAGUGGgUGCuaGgUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 331237 0.69 0.94212
Target:  5'- aCUGCuGGCUCACUUACccaaGAUCCuCGCAg -3'
miRNA:   3'- -GGUGuCCGAGUGGGUG----CUAGGuGUGU- -5'
10594 3' -55.4 NC_002687.1 + 62056 0.69 0.94212
Target:  5'- -aACAGGCgccgcgugaUCAUCCGCGAUCCuauCAUc -3'
miRNA:   3'- ggUGUCCG---------AGUGGGUGCUAGGu--GUGu -5'
10594 3' -55.4 NC_002687.1 + 144152 0.68 0.953505
Target:  5'- cUCGCGGGCUCuCUCACGAgaaccuggguaCAUACAa -3'
miRNA:   3'- -GGUGUCCGAGuGGGUGCUag---------GUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 308110 0.68 0.954256
Target:  5'- aCGCAGGU--GCCUggACGGUCCAgACGa -3'
miRNA:   3'- gGUGUCCGagUGGG--UGCUAGGUgUGU- -5'
10594 3' -55.4 NC_002687.1 + 22209 0.68 0.957886
Target:  5'- uCCACAGGUUCcCCCGCcgccagcguGUgCGCACGa -3'
miRNA:   3'- -GGUGUCCGAGuGGGUGc--------UAgGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 330511 0.68 0.957886
Target:  5'- gCCAgCAcGGCUCAgCCAUGAacuuUCCAaCGCGa -3'
miRNA:   3'- -GGU-GU-CCGAGUgGGUGCU----AGGU-GUGU- -5'
10594 3' -55.4 NC_002687.1 + 10801 0.68 0.961313
Target:  5'- uCCuu-GGCUCGCCCGuccCGGUgCCACAUu -3'
miRNA:   3'- -GGuguCCGAGUGGGU---GCUA-GGUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.