miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10594 3' -55.4 NC_002687.1 + 331237 0.69 0.94212
Target:  5'- aCUGCuGGCUCACUUACccaaGAUCCuCGCAg -3'
miRNA:   3'- -GGUGuCCGAGUGGGUG----CUAGGuGUGU- -5'
10594 3' -55.4 NC_002687.1 + 331685 0.8 0.408046
Target:  5'- gUCGguGGCUCcacgACCCACGAUCCgGCACAg -3'
miRNA:   3'- -GGUguCCGAG----UGGGUGCUAGG-UGUGU- -5'
10594 3' -55.4 NC_002687.1 + 211023 0.75 0.695898
Target:  5'- aCAUAGuGCcgUCACCCAUGAcCCGCACGa -3'
miRNA:   3'- gGUGUC-CG--AGUGGGUGCUaGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 4026 0.74 0.743005
Target:  5'- cCCACGGGC--ACCCGUGAUCaCGCACGu -3'
miRNA:   3'- -GGUGUCCGagUGGGUGCUAG-GUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 45347 0.71 0.860209
Target:  5'- cCUugGGGCUCuucucCCCcUGGUCCGCGCc -3'
miRNA:   3'- -GGugUCCGAGu----GGGuGCUAGGUGUGu -5'
10594 3' -55.4 NC_002687.1 + 198543 0.71 0.881173
Target:  5'- aCCACGGGCUgaCGCaCgGCGAUuuGCACc -3'
miRNA:   3'- -GGUGUCCGA--GUG-GgUGCUAggUGUGu -5'
10594 3' -55.4 NC_002687.1 + 63386 0.7 0.922952
Target:  5'- cUCGCAGGCUacCACCCgucggcguGCGAgaucCCAUACGc -3'
miRNA:   3'- -GGUGUCCGA--GUGGG--------UGCUa---GGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 110472 0.69 0.932968
Target:  5'- uCCuuGGGuCUCACCCGgGAgaugUUCACACGa -3'
miRNA:   3'- -GGugUCC-GAGUGGGUgCU----AGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 275784 0.69 0.937651
Target:  5'- gCGCAGGCUCAUCgACGc-CgGCGCGa -3'
miRNA:   3'- gGUGUCCGAGUGGgUGCuaGgUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 331476 1.11 0.005829
Target:  5'- aCCACAGGCUCACCCACGAUCCACACAa -3'
miRNA:   3'- -GGUGUCCGAGUGGGUGCUAGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 211870 0.68 0.967579
Target:  5'- gCuuGGGCUCGUCCACG--CCGCACAc -3'
miRNA:   3'- gGugUCCGAGUGGGUGCuaGGUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 290256 0.68 0.961313
Target:  5'- aCAgAGGCUaaCGCCCAgGGUCCGacCGCc -3'
miRNA:   3'- gGUgUCCGA--GUGGGUgCUAGGU--GUGu -5'
10594 3' -55.4 NC_002687.1 + 144152 0.68 0.953505
Target:  5'- cUCGCGGGCUCuCUCACGAgaaccuggguaCAUACAa -3'
miRNA:   3'- -GGUGUCCGAGuGGGUGCUag---------GUGUGU- -5'
10594 3' -55.4 NC_002687.1 + 153245 0.67 0.975574
Target:  5'- gUCGCGGGUUCGauucucCCCGCG-UCCACu-- -3'
miRNA:   3'- -GGUGUCCGAGU------GGGUGCuAGGUGugu -5'
10594 3' -55.4 NC_002687.1 + 308110 0.68 0.954256
Target:  5'- aCGCAGGU--GCCUggACGGUCCAgACGa -3'
miRNA:   3'- gGUGUCCGagUGGG--UGCUAGGUgUGU- -5'
10594 3' -55.4 NC_002687.1 + 154527 0.68 0.961313
Target:  5'- uCCucucCGGGUuccaUCACCaUugGAUCCGCACu -3'
miRNA:   3'- -GGu---GUCCG----AGUGG-GugCUAGGUGUGu -5'
10594 3' -55.4 NC_002687.1 + 209318 0.67 0.975574
Target:  5'- gCCGCGGGa-UACCCuguUGAUCCGgACGa -3'
miRNA:   3'- -GGUGUCCgaGUGGGu--GCUAGGUgUGU- -5'
10594 3' -55.4 NC_002687.1 + 27987 0.66 0.989815
Target:  5'- uUCACGGccCUCACCaucaacacggaACGAUCCAUACu -3'
miRNA:   3'- -GGUGUCc-GAGUGGg----------UGCUAGGUGUGu -5'
10594 3' -55.4 NC_002687.1 + 330511 0.68 0.957886
Target:  5'- gCCAgCAcGGCUCAgCCAUGAacuuUCCAaCGCGa -3'
miRNA:   3'- -GGU-GU-CCGAGUgGGUGCU----AGGU-GUGU- -5'
10594 3' -55.4 NC_002687.1 + 10801 0.68 0.961313
Target:  5'- uCCuu-GGCUCGCCCGuccCGGUgCCACAUu -3'
miRNA:   3'- -GGuguCCGAGUGGGU---GCUA-GGUGUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.