miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10595 5' -55.7 NC_002687.1 + 290560 0.66 0.985214
Target:  5'- uCUCGAUGccuUCgGCGCAUGUUGUUa- -3'
miRNA:   3'- -GAGCUGCuc-AGgCGCGUGCAACGAgu -5'
10595 5' -55.7 NC_002687.1 + 300811 0.66 0.985214
Target:  5'- aCUCGAUGAaagcUUCGUGCGCuuuGUUGCUUg -3'
miRNA:   3'- -GAGCUGCUc---AGGCGCGUG---CAACGAGu -5'
10595 5' -55.7 NC_002687.1 + 216063 0.66 0.983501
Target:  5'- aUgGACGGGcCUGCGC-CGaUGUUCAg -3'
miRNA:   3'- gAgCUGCUCaGGCGCGuGCaACGAGU- -5'
10595 5' -55.7 NC_002687.1 + 107680 0.66 0.983501
Target:  5'- uUCGGCGAGguacaCGUGCAaag-GCUCAc -3'
miRNA:   3'- gAGCUGCUCag---GCGCGUgcaaCGAGU- -5'
10595 5' -55.7 NC_002687.1 + 113654 0.66 0.983501
Target:  5'- gCUCGGCcuGUCCGUGCGgGgaGUUCu -3'
miRNA:   3'- -GAGCUGcuCAGGCGCGUgCaaCGAGu -5'
10595 5' -55.7 NC_002687.1 + 51882 0.66 0.983501
Target:  5'- -gCGACGaAGUgaGCGC-CGUgGCUCAa -3'
miRNA:   3'- gaGCUGC-UCAggCGCGuGCAaCGAGU- -5'
10595 5' -55.7 NC_002687.1 + 50897 0.66 0.983501
Target:  5'- -gCGACGaAGUgaGCGC-CGUgGCUCAa -3'
miRNA:   3'- gaGCUGC-UCAggCGCGuGCAaCGAGU- -5'
10595 5' -55.7 NC_002687.1 + 50011 0.66 0.983501
Target:  5'- -gCGACGaAGUgaGCGC-CGUgGCUCAa -3'
miRNA:   3'- gaGCUGC-UCAggCGCGuGCAaCGAGU- -5'
10595 5' -55.7 NC_002687.1 + 26573 0.66 0.981643
Target:  5'- -aCGGCGGccuucagcuguGUCCGUGCuuCGUUGgUCAg -3'
miRNA:   3'- gaGCUGCU-----------CAGGCGCGu-GCAACgAGU- -5'
10595 5' -55.7 NC_002687.1 + 4328 0.66 0.981643
Target:  5'- aUCGACGAGcacaUGCGCACGUaccugguagaUGCa-- -3'
miRNA:   3'- gAGCUGCUCag--GCGCGUGCA----------ACGagu -5'
10595 5' -55.7 NC_002687.1 + 199041 0.66 0.979631
Target:  5'- --gGGCGAGUgUGCGCAUGagcGCUCc -3'
miRNA:   3'- gagCUGCUCAgGCGCGUGCaa-CGAGu -5'
10595 5' -55.7 NC_002687.1 + 168265 0.66 0.979631
Target:  5'- uCUCGGCuuuucUCCGgGCGCGUUGC-CGc -3'
miRNA:   3'- -GAGCUGcuc--AGGCgCGUGCAACGaGU- -5'
10595 5' -55.7 NC_002687.1 + 200238 0.67 0.977234
Target:  5'- -cCGACGA--CCGCGCggcucuuGCGgUGCUCAa -3'
miRNA:   3'- gaGCUGCUcaGGCGCG-------UGCaACGAGU- -5'
10595 5' -55.7 NC_002687.1 + 145784 0.67 0.977234
Target:  5'- cCUCGGCGAuggCCGCcucggacauggacGCGCGccUGCUCGu -3'
miRNA:   3'- -GAGCUGCUca-GGCG-------------CGUGCa-ACGAGU- -5'
10595 5' -55.7 NC_002687.1 + 200121 0.67 0.967058
Target:  5'- -gCGACGAcggCCGCGCGcCGUUgacgaGCUCGu -3'
miRNA:   3'- gaGCUGCUca-GGCGCGU-GCAA-----CGAGU- -5'
10595 5' -55.7 NC_002687.1 + 166865 0.68 0.960748
Target:  5'- cCUCGAUcGGUCUGCGUACGUcGUg-- -3'
miRNA:   3'- -GAGCUGcUCAGGCGCGUGCAaCGagu -5'
10595 5' -55.7 NC_002687.1 + 10250 0.68 0.957299
Target:  5'- cCUCGAaaaGAGUCCGUGuCugGgcGC-CAg -3'
miRNA:   3'- -GAGCUg--CUCAGGCGC-GugCaaCGaGU- -5'
10595 5' -55.7 NC_002687.1 + 71458 0.68 0.953649
Target:  5'- -aCGACGAGUgCCGCuaGCACGacggcGCUUAg -3'
miRNA:   3'- gaGCUGCUCA-GGCG--CGUGCaa---CGAGU- -5'
10595 5' -55.7 NC_002687.1 + 302608 0.7 0.89959
Target:  5'- gUUGGgGAGaUCCGCGCAUcucUGCUCAa -3'
miRNA:   3'- gAGCUgCUC-AGGCGCGUGca-ACGAGU- -5'
10595 5' -55.7 NC_002687.1 + 277152 0.71 0.852107
Target:  5'- -cCGACGAGgcaGCGCGCGggGCUUu -3'
miRNA:   3'- gaGCUGCUCaggCGCGUGCaaCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.