miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10597 3' -53.2 NC_002687.1 + 209992 0.66 0.997582
Target:  5'- cCGUGGUGcCGGugGUGCagaugguGC-CUGUGg -3'
miRNA:   3'- -GUACCACaGCCugUAUG-------CGaGACGCg -5'
10597 3' -53.2 NC_002687.1 + 64576 0.66 0.997208
Target:  5'- -uUGGgGUCGaGGCAa--GCUCUGgGCu -3'
miRNA:   3'- guACCaCAGC-CUGUaugCGAGACgCG- -5'
10597 3' -53.2 NC_002687.1 + 317199 0.66 0.997208
Target:  5'- ------aUCGGGCAUAUGCUCgagGCGg -3'
miRNA:   3'- guaccacAGCCUGUAUGCGAGa--CGCg -5'
10597 3' -53.2 NC_002687.1 + 241691 0.66 0.996736
Target:  5'- gGUGGUGUCGGGuacuCGuUUCUGUGg -3'
miRNA:   3'- gUACCACAGCCUguauGC-GAGACGCg -5'
10597 3' -53.2 NC_002687.1 + 299828 0.66 0.9962
Target:  5'- --aGGaGUCGGGcCAUGCGCUCgaGgGUu -3'
miRNA:   3'- guaCCaCAGCCU-GUAUGCGAGa-CgCG- -5'
10597 3' -53.2 NC_002687.1 + 209938 0.66 0.995594
Target:  5'- cCGUGGUGgCGGugGUGC-CguaUGUGCc -3'
miRNA:   3'- -GUACCACaGCCugUAUGcGag-ACGCG- -5'
10597 3' -53.2 NC_002687.1 + 64889 0.66 0.995398
Target:  5'- aGUGGUGUCcGGCAcAcccacaucaugcacCGCUUUGCGUc -3'
miRNA:   3'- gUACCACAGcCUGUaU--------------GCGAGACGCG- -5'
10597 3' -53.2 NC_002687.1 + 139777 0.67 0.994912
Target:  5'- aCAUGGUGUgcggUGGACAUGCacaaguccaUCUGCa- -3'
miRNA:   3'- -GUACCACA----GCCUGUAUGcg-------AGACGcg -5'
10597 3' -53.2 NC_002687.1 + 25978 0.67 0.994146
Target:  5'- aAUGGUGUCGGuCGUcaacgacagACGCUUc-CGCu -3'
miRNA:   3'- gUACCACAGCCuGUA---------UGCGAGacGCG- -5'
10597 3' -53.2 NC_002687.1 + 17692 0.67 0.994146
Target:  5'- -uUGGUGUagaaGGCAgcccggcgGCGUUUUGCGCa -3'
miRNA:   3'- guACCACAgc--CUGUa-------UGCGAGACGCG- -5'
10597 3' -53.2 NC_002687.1 + 17470 0.67 0.994146
Target:  5'- -uUGGUGUagaaGGCAgcccggcgGCGUUUUGCGCa -3'
miRNA:   3'- guACCACAgc--CUGUa-------UGCGAGACGCG- -5'
10597 3' -53.2 NC_002687.1 + 297332 0.67 0.99329
Target:  5'- gAUGGUGUCGGcggacugcuuGCGgaacuCGCgugCgGCGCg -3'
miRNA:   3'- gUACCACAGCC----------UGUau---GCGa--GaCGCG- -5'
10597 3' -53.2 NC_002687.1 + 169946 0.67 0.99329
Target:  5'- -----aGUCGGACGgucuucccCGCaUCUGCGCa -3'
miRNA:   3'- guaccaCAGCCUGUau------GCG-AGACGCG- -5'
10597 3' -53.2 NC_002687.1 + 109121 0.67 0.992336
Target:  5'- gGUGGUGcucUCGGuaAUAUugGCUCUcUGCu -3'
miRNA:   3'- gUACCAC---AGCC--UGUAugCGAGAcGCG- -5'
10597 3' -53.2 NC_002687.1 + 12263 0.67 0.992336
Target:  5'- aGUGGUcgcgaaacUGGGCGUgACGCggCUGCGCa -3'
miRNA:   3'- gUACCAca------GCCUGUA-UGCGa-GACGCG- -5'
10597 3' -53.2 NC_002687.1 + 205439 0.67 0.991278
Target:  5'- --cGGUGUCGuGGgAcACGCUgUGgGCa -3'
miRNA:   3'- guaCCACAGC-CUgUaUGCGAgACgCG- -5'
10597 3' -53.2 NC_002687.1 + 213627 0.67 0.991278
Target:  5'- --gGGUaGUCGGG---ACGCUgucCUGCGCg -3'
miRNA:   3'- guaCCA-CAGCCUguaUGCGA---GACGCG- -5'
10597 3' -53.2 NC_002687.1 + 23566 0.68 0.984852
Target:  5'- ------uUCGGACAgucuuuuuuugagccUGCGCUCUGCGUc -3'
miRNA:   3'- guaccacAGCCUGU---------------AUGCGAGACGCG- -5'
10597 3' -53.2 NC_002687.1 + 224090 0.68 0.984157
Target:  5'- gGUGGUGcuggCGGACGUucgggACGCgguggCggugGCGCu -3'
miRNA:   3'- gUACCACa---GCCUGUA-----UGCGa----Ga---CGCG- -5'
10597 3' -53.2 NC_002687.1 + 167715 0.69 0.975816
Target:  5'- gGUGGUGUUGGugGUgauaucgugACGUgucagaUGCGCc -3'
miRNA:   3'- gUACCACAGCCugUA---------UGCGag----ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.