Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10597 | 5' | -48.1 | NC_002687.1 | + | 332894 | 1.08 | 0.037557 |
Target: 5'- cGUACACAAAGCCGUCACGAUACCAUAu -3' miRNA: 3'- -CAUGUGUUUCGGCAGUGCUAUGGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 112040 | 0.75 | 0.967635 |
Target: 5'- -aACGCAGAucucuucaauGCCGUCGuCGAUGCCAUu -3' miRNA: 3'- caUGUGUUU----------CGGCAGU-GCUAUGGUAu -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 254342 | 0.73 | 0.986451 |
Target: 5'- cUGCGCGucGGCCGUCAUGGUGuCCGc- -3' miRNA: 3'- cAUGUGUu-UCGGCAGUGCUAU-GGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 257351 | 0.69 | 0.999586 |
Target: 5'- uGUGCAgCAucGCCGcgaUCGCGAUugCAg- -3' miRNA: 3'- -CAUGU-GUuuCGGC---AGUGCUAugGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 148995 | 0.69 | 0.999586 |
Target: 5'- -cGCACGAcuUCGuUCAUGGUGCCAUAu -3' miRNA: 3'- caUGUGUUucGGC-AGUGCUAUGGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 60452 | 0.69 | 0.999661 |
Target: 5'- cGUGCACcucGAcGUCGUCACuuaugguGAUGCCGUAa -3' miRNA: 3'- -CAUGUG---UUuCGGCAGUG-------CUAUGGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 165443 | 0.69 | 0.999669 |
Target: 5'- gGUACAgAGAGCagugGUCGCGGauaUACCAa- -3' miRNA: 3'- -CAUGUgUUUCGg---CAGUGCU---AUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 142500 | 0.69 | 0.999669 |
Target: 5'- cGUACACAuuGCCGg--UGGUACCGg- -3' miRNA: 3'- -CAUGUGUuuCGGCaguGCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 314975 | 0.68 | 0.999737 |
Target: 5'- -aACGagucAAGCCGUCACGucgGCCAa- -3' miRNA: 3'- caUGUgu--UUCGGCAGUGCua-UGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 65567 | 0.68 | 0.999737 |
Target: 5'- -gGCACAugaugccguGCCGUCGcCGGUGuCCAUGa -3' miRNA: 3'- caUGUGUuu-------CGGCAGU-GCUAU-GGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 312753 | 0.68 | 0.999737 |
Target: 5'- -aACGCGAGucgauauggccGCCGUCGCgGAUACCu-- -3' miRNA: 3'- caUGUGUUU-----------CGGCAGUG-CUAUGGuau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 238886 | 0.68 | 0.999837 |
Target: 5'- aUGCGCAcGGCUGUCAUGAg--CAUAg -3' miRNA: 3'- cAUGUGUuUCGGCAGUGCUaugGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 255331 | 0.67 | 0.999923 |
Target: 5'- --gUACGGAGCCGaCACGAUggcgcagGCCAg- -3' miRNA: 3'- cauGUGUUUCGGCaGUGCUA-------UGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 333217 | 0.67 | 0.999925 |
Target: 5'- -gGCGCAGAGCguaUGUC-CGAcACCAUGc -3' miRNA: 3'- caUGUGUUUCG---GCAGuGCUaUGGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 309973 | 0.67 | 0.999941 |
Target: 5'- uUACGCAGaagaagcAGCCuGUCGCGGagGCCAg- -3' miRNA: 3'- cAUGUGUU-------UCGG-CAGUGCUa-UGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 168089 | 0.67 | 0.999957 |
Target: 5'- -gGCGCAucuGacaCGUCACGAUAUCAc- -3' miRNA: 3'- caUGUGUuu-Cg--GCAGUGCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 90607 | 0.67 | 0.999968 |
Target: 5'- ---uGCGAcGaCGUCACGAUGCCAg- -3' miRNA: 3'- caugUGUUuCgGCAGUGCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 93075 | 0.67 | 0.999968 |
Target: 5'- -aACACGAacGGUaccuuUCACGAUGCCGUGc -3' miRNA: 3'- caUGUGUU--UCGgc---AGUGCUAUGGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 164317 | 0.67 | 0.999968 |
Target: 5'- aGUACgagACAGAGUCGUCGgGAU-CCGa- -3' miRNA: 3'- -CAUG---UGUUUCGGCAGUgCUAuGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 71883 | 0.66 | 0.999975 |
Target: 5'- -gACGCuacgaccguGGCCGUCgccuacgACGAUACCAc- -3' miRNA: 3'- caUGUGuu-------UCGGCAG-------UGCUAUGGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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