miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10597 5' -48.1 NC_002687.1 + 2779 0.66 0.999993
Target:  5'- -cGCACAGGGCCGUaccauccgugucUAUGAcACCGg- -3'
miRNA:   3'- caUGUGUUUCGGCA------------GUGCUaUGGUau -5'
10597 5' -48.1 NC_002687.1 + 3378 0.66 0.999991
Target:  5'- -cACACAugaGAGCCGUCACc---CCAUu -3'
miRNA:   3'- caUGUGU---UUCGGCAGUGcuauGGUAu -5'
10597 5' -48.1 NC_002687.1 + 6606 0.66 0.99999
Target:  5'- uUGCGCAugauuuaucugaagGAGCCGUUcgGgGAUGCCGa- -3'
miRNA:   3'- cAUGUGU--------------UUCGGCAG--UgCUAUGGUau -5'
10597 5' -48.1 NC_002687.1 + 60452 0.69 0.999661
Target:  5'- cGUGCACcucGAcGUCGUCACuuaugguGAUGCCGUAa -3'
miRNA:   3'- -CAUGUG---UUuCGGCAGUG-------CUAUGGUAU- -5'
10597 5' -48.1 NC_002687.1 + 65567 0.68 0.999737
Target:  5'- -gGCACAugaugccguGCCGUCGcCGGUGuCCAUGa -3'
miRNA:   3'- caUGUGUuu-------CGGCAGU-GCUAU-GGUAU- -5'
10597 5' -48.1 NC_002687.1 + 70576 0.66 0.999982
Target:  5'- -cGCGC-AGGUCGUCGCGGaaaaaagauuggUGCCAg- -3'
miRNA:   3'- caUGUGuUUCGGCAGUGCU------------AUGGUau -5'
10597 5' -48.1 NC_002687.1 + 71883 0.66 0.999975
Target:  5'- -gACGCuacgaccguGGCCGUCgccuacgACGAUACCAc- -3'
miRNA:   3'- caUGUGuu-------UCGGCAG-------UGCUAUGGUau -5'
10597 5' -48.1 NC_002687.1 + 83677 0.66 0.999976
Target:  5'- gGUGuCGCu-AGCCGaCGgGAUGCCGUAg -3'
miRNA:   3'- -CAU-GUGuuUCGGCaGUgCUAUGGUAU- -5'
10597 5' -48.1 NC_002687.1 + 90607 0.67 0.999968
Target:  5'- ---uGCGAcGaCGUCACGAUGCCAg- -3'
miRNA:   3'- caugUGUUuCgGCAGUGCUAUGGUau -5'
10597 5' -48.1 NC_002687.1 + 93075 0.67 0.999968
Target:  5'- -aACACGAacGGUaccuuUCACGAUGCCGUGc -3'
miRNA:   3'- caUGUGUU--UCGgc---AGUGCUAUGGUAU- -5'
10597 5' -48.1 NC_002687.1 + 112040 0.75 0.967635
Target:  5'- -aACGCAGAucucuucaauGCCGUCGuCGAUGCCAUu -3'
miRNA:   3'- caUGUGUUU----------CGGCAGU-GCUAUGGUAu -5'
10597 5' -48.1 NC_002687.1 + 142500 0.69 0.999669
Target:  5'- cGUACACAuuGCCGg--UGGUACCGg- -3'
miRNA:   3'- -CAUGUGUuuCGGCaguGCUAUGGUau -5'
10597 5' -48.1 NC_002687.1 + 148995 0.69 0.999586
Target:  5'- -cGCACGAcuUCGuUCAUGGUGCCAUAu -3'
miRNA:   3'- caUGUGUUucGGC-AGUGCUAUGGUAU- -5'
10597 5' -48.1 NC_002687.1 + 164006 0.66 0.999993
Target:  5'- ----uCGAGGUCGUCGuCGGUACCGa- -3'
miRNA:   3'- cauguGUUUCGGCAGU-GCUAUGGUau -5'
10597 5' -48.1 NC_002687.1 + 164317 0.67 0.999968
Target:  5'- aGUACgagACAGAGUCGUCGgGAU-CCGa- -3'
miRNA:   3'- -CAUG---UGUUUCGGCAGUgCUAuGGUau -5'
10597 5' -48.1 NC_002687.1 + 165443 0.69 0.999669
Target:  5'- gGUACAgAGAGCagugGUCGCGGauaUACCAa- -3'
miRNA:   3'- -CAUGUgUUUCGg---CAGUGCU---AUGGUau -5'
10597 5' -48.1 NC_002687.1 + 168089 0.67 0.999957
Target:  5'- -gGCGCAucuGacaCGUCACGAUAUCAc- -3'
miRNA:   3'- caUGUGUuu-Cg--GCAGUGCUAUGGUau -5'
10597 5' -48.1 NC_002687.1 + 200183 0.66 0.99998
Target:  5'- -aACACccguGGCCGUCGuaauaaauuacgcuCGGUGCCAa- -3'
miRNA:   3'- caUGUGuu--UCGGCAGU--------------GCUAUGGUau -5'
10597 5' -48.1 NC_002687.1 + 200409 0.66 0.999993
Target:  5'- uGUACGCc--GCCGgaugUCcCGAUGCCGUGc -3'
miRNA:   3'- -CAUGUGuuuCGGC----AGuGCUAUGGUAU- -5'
10597 5' -48.1 NC_002687.1 + 238536 0.66 0.999982
Target:  5'- cGUACACGAAcgucaucGUCGUCAUGugcGCCAa- -3'
miRNA:   3'- -CAUGUGUUU-------CGGCAGUGCua-UGGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.