Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 25541 | 0.66 | 0.93228 |
Target: 5'- -gCAG-GUAAUGCCAGcgGCUGUgGCc -3' miRNA: 3'- aaGUCuUAUUGCGGUUagCGACAgCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 15060 | 0.66 | 0.919698 |
Target: 5'- -gCAGAAcAGCGCCGgAUCGCgaUGaUGCa -3' miRNA: 3'- aaGUCUUaUUGCGGU-UAGCG--ACaGCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 12596 | 0.66 | 0.919698 |
Target: 5'- gUCAGugcUGACGUCAuuucaCGCaucUGUCGCa -3' miRNA: 3'- aAGUCuu-AUUGCGGUua---GCG---ACAGCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 18886 | 0.66 | 0.912912 |
Target: 5'- -cCAGAAcGGCGCuCAGgcUgGCUGUgGCg -3' miRNA: 3'- aaGUCUUaUUGCG-GUU--AgCGACAgCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 14435 | 0.67 | 0.889813 |
Target: 5'- -aCAGA---GCGCCAcggcaaaGUCGCcaUGUCGUc -3' miRNA: 3'- aaGUCUuauUGCGGU-------UAGCG--ACAGCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 13573 | 0.68 | 0.856518 |
Target: 5'- aUCAcgcuGGAUGAUGCC-AUCGCUGaCGg -3' miRNA: 3'- aAGU----CUUAUUGCGGuUAGCGACaGCg -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 27445 | 0.68 | 0.856518 |
Target: 5'- gUCAGAAUGACGCUAuccaGC-GcCGCc -3' miRNA: 3'- aAGUCUUAUUGCGGUuag-CGaCaGCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 12228 | 0.68 | 0.827982 |
Target: 5'- gUCAGGAUGugGCagaaGGUCGUgccCGCg -3' miRNA: 3'- aAGUCUUAUugCGg---UUAGCGacaGCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 1553 | 0.68 | 0.825001 |
Target: 5'- cUCAGcAAUAACGCCGcuuUCGCUucaacagguaaagaGuUCGCa -3' miRNA: 3'- aAGUC-UUAUUGCGGUu--AGCGA--------------C-AGCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 25312 | 0.69 | 0.807709 |
Target: 5'- -cCGGAugccAUGACGUCugagaCGCUGUUGCa -3' miRNA: 3'- aaGUCU----UAUUGCGGuua--GCGACAGCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 22097 | 0.69 | 0.775687 |
Target: 5'- -aCAG-AUAcCGCCAGUCGCUGaccgGCa -3' miRNA: 3'- aaGUCuUAUuGCGGUUAGCGACag--CG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 15377 | 0.72 | 0.635654 |
Target: 5'- aUCGGAAUAAUGCCAccgGCacGUCGCc -3' miRNA: 3'- aAGUCUUAUUGCGGUuagCGa-CAGCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 11520 | 0.72 | 0.623627 |
Target: 5'- -cCGGAcUGAUGCCuuGUCGCgGUUGCa -3' miRNA: 3'- aaGUCUuAUUGCGGu-UAGCGaCAGCG- -5' |
|||||||
1061 | 5' | -48.4 | NC_000929.1 | + | 24038 | 1.1 | 0.002542 |
Target: 5'- uUUCAGAAUAACGCCAAUCGCUGUCGCc -3' miRNA: 3'- -AAGUCUUAUUGCGGUUAGCGACAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home