Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 28528 | 0.66 | 0.742534 |
Target: 5'- aACuCUGGAUGCCGAa--CCUGCu-- -3' miRNA: 3'- gUGcGACUUACGGCUaugGGACGuug -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 30114 | 0.66 | 0.720079 |
Target: 5'- -cCGCUGGcgGCUGucGCCUguuUGCGGCg -3' miRNA: 3'- guGCGACUuaCGGCuaUGGG---ACGUUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 15284 | 0.66 | 0.708696 |
Target: 5'- cCACGCUGAugcagGCCGugauggAUAUCggGCGACg -3' miRNA: 3'- -GUGCGACUua---CGGC------UAUGGgaCGUUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 28990 | 0.66 | 0.708696 |
Target: 5'- gGCGCaGAGgcGCUGAUugCCUGUguaGGCg -3' miRNA: 3'- gUGCGaCUUa-CGGCUAugGGACG---UUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 3111 | 0.67 | 0.68569 |
Target: 5'- aCGCGCUGGAaguUGCUGA-ACUgCUGCcGCa -3' miRNA: 3'- -GUGCGACUU---ACGGCUaUGG-GACGuUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 6151 | 0.67 | 0.674093 |
Target: 5'- aACGCUGGAgcGUCu-UGgCCUGCAACg -3' miRNA: 3'- gUGCGACUUa-CGGcuAUgGGACGUUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 2126 | 0.67 | 0.650778 |
Target: 5'- -uCGCUGcuGUGCCGGUAUCagaUGCAu- -3' miRNA: 3'- guGCGACu-UACGGCUAUGGg--ACGUug -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 21815 | 0.67 | 0.650778 |
Target: 5'- aCGCGCUGAcggggaGCCGGUGuuCCgCUGaCGGCa -3' miRNA: 3'- -GUGCGACUua----CGGCUAU--GG-GAC-GUUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 3799 | 0.67 | 0.639085 |
Target: 5'- cCACGCcGuaaaggGCCGcucucccgcGCCCUGCGACg -3' miRNA: 3'- -GUGCGaCuua---CGGCua-------UGGGACGUUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 26448 | 0.68 | 0.61569 |
Target: 5'- uGCGCUGAuggAUGCUcuuGAUGCUCcggGUAGCg -3' miRNA: 3'- gUGCGACU---UACGG---CUAUGGGa--CGUUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 13191 | 0.69 | 0.557673 |
Target: 5'- gGCGCUGGAauacaucGCCGccuGUGCCCUGUuuGCc -3' miRNA: 3'- gUGCGACUUa------CGGC---UAUGGGACGu-UG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 14964 | 0.69 | 0.557673 |
Target: 5'- gCugGCUGGgaaaaugcgcGUGCCGGUGgCgCUGCAu- -3' miRNA: 3'- -GugCGACU----------UACGGCUAUgG-GACGUug -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 8091 | 0.71 | 0.427019 |
Target: 5'- gGCGCaccAGUGCUGAUGCaaucgcauaaCCUGCAACa -3' miRNA: 3'- gUGCGac-UUACGGCUAUG----------GGACGUUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 29912 | 0.72 | 0.401126 |
Target: 5'- aACGCUGAGUGCCauugcuuaugcucagGggGCCUUGCuGCc -3' miRNA: 3'- gUGCGACUUACGG---------------CuaUGGGACGuUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 31766 | 0.75 | 0.255318 |
Target: 5'- gUACGCUG--UGCUGAUGCCCcgGCAGu -3' miRNA: 3'- -GUGCGACuuACGGCUAUGGGa-CGUUg -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 1788 | 0.75 | 0.235069 |
Target: 5'- aGCGCUGAccugGUa-AUGCCCUGCAACg -3' miRNA: 3'- gUGCGACUua--CGgcUAUGGGACGUUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 18365 | 0.77 | 0.187606 |
Target: 5'- cCACGCUGGAcgGCgGcgGCCCaGCAGCg -3' miRNA: 3'- -GUGCGACUUa-CGgCuaUGGGaCGUUG- -5' |
|||||||
1062 | 3' | -52.5 | NC_000929.1 | + | 25400 | 1.11 | 0.0007 |
Target: 5'- aCACGCUGAAUGCCGAUACCCUGCAACa -3' miRNA: 3'- -GUGCGACUUACGGCUAUGGGACGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home