Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 10626 | 5' | -53.7 | NC_002702.1 | + | 6634 | 0.66 | 0.650411 |
|
Target: 5'- uGGCCGCGCaGGUGAUuuGUCaCCAGUCc -3' miRNA: 3'- -CUGGUGCGgCCGUUG--UAGaGGUUAGa -5' |
|||||||
| 10626 | 5' | -53.7 | NC_002702.1 | + | 13271 | 0.68 | 0.512653 |
|
Target: 5'- --aCAUGCCGGgGACG-CUCCAGUa- -3' miRNA: 3'- cugGUGCGGCCgUUGUaGAGGUUAga -5' |
|||||||
| 10626 | 5' | -53.7 | NC_002702.1 | + | 15560 | 0.68 | 0.490677 |
|
Target: 5'- aACCAgCGCCGGCAAaaagcCUCCGcUCa -3' miRNA: 3'- cUGGU-GCGGCCGUUgua--GAGGUuAGa -5' |
|||||||
| 10626 | 5' | -53.7 | NC_002702.1 | + | 13241 | 0.69 | 0.458568 |
|
Target: 5'- uACCGaGCCGGUGACGUUucgcgCCAGUCa -3' miRNA: 3'- cUGGUgCGGCCGUUGUAGa----GGUUAGa -5' |
|||||||
| 10626 | 5' | -53.7 | NC_002702.1 | + | 28399 | 0.71 | 0.351502 |
|
Target: 5'- aACCAgG-CGGCuGCAUCUCCAGUUc -3' miRNA: 3'- cUGGUgCgGCCGuUGUAGAGGUUAGa -5' |
|||||||
| 10626 | 5' | -53.7 | NC_002702.1 | + | 14044 | 0.78 | 0.114902 |
|
Target: 5'- cGCCGCGCCGGCGGugguCGUCUCCGccccucGUCg -3' miRNA: 3'- cUGGUGCGGCCGUU----GUAGAGGU------UAGa -5' |
|||||||
| 10626 | 5' | -53.7 | NC_002702.1 | + | 3610 | 1.08 | 0.00077 |
|
Target: 5'- gGACCACGCCGGCAACAUCUCCAAUCUg -3' miRNA: 3'- -CUGGUGCGGCCGUUGUAGAGGUUAGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home