miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10635 3' -57.7 NC_002702.1 + 23024 0.69 0.274457
Target:  5'- cUCCGGUC-UGuGGGUCGAgguauACCCCGuGCc -3'
miRNA:   3'- -AGGCCAGuGC-CCCAGUU-----UGGGGUcUG- -5'
10635 3' -57.7 NC_002702.1 + 22957 0.66 0.416412
Target:  5'- --aGGggCACGGGGUauaccucGACCCaCAGACc -3'
miRNA:   3'- aggCCa-GUGCCCCAgu-----UUGGG-GUCUG- -5'
10635 3' -57.7 NC_002702.1 + 13981 0.68 0.31968
Target:  5'- cCCGGUgGCGGauguGGUCAGGgCCgugCAGGCg -3'
miRNA:   3'- aGGCCAgUGCC----CCAGUUUgGG---GUCUG- -5'
10635 3' -57.7 NC_002702.1 + 13845 0.68 0.335948
Target:  5'- gUCGGcCACGGGGUCG--UCCguGAUc -3'
miRNA:   3'- aGGCCaGUGCCCCAGUuuGGGguCUG- -5'
10635 3' -57.7 NC_002702.1 + 12842 1.1 0.000235
Target:  5'- aUCCGGUCACGGGGUCAAACCCCAGACg -3'
miRNA:   3'- -AGGCCAGUGCCCCAGUUUGGGGUCUG- -5'
10635 3' -57.7 NC_002702.1 + 12781 0.67 0.379211
Target:  5'- uUCC-GUC-UGGGGUUuGACCCCGuGACc -3'
miRNA:   3'- -AGGcCAGuGCCCCAGuUUGGGGU-CUG- -5'
10635 3' -57.7 NC_002702.1 + 9452 0.66 0.434846
Target:  5'- cUCCGGUCAUcaaugaGGGGgaaggaguggcCAggcuugacgccgaGACCCCAGAa -3'
miRNA:   3'- -AGGCCAGUG------CCCCa----------GU-------------UUGGGGUCUg -5'
10635 3' -57.7 NC_002702.1 + 8232 0.66 0.465907
Target:  5'- cUUCGaagCugGuGGGUgGAACCUCAGGCu -3'
miRNA:   3'- -AGGCca-GugC-CCCAgUUUGGGGUCUG- -5'
10635 3' -57.7 NC_002702.1 + 4760 0.66 0.426055
Target:  5'- -gUGGaugCugGGGGUCAAAUaCCAGAg -3'
miRNA:   3'- agGCCa--GugCCCCAGUUUGgGGUCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.