miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10642 5' -49.3 NC_002702.1 + 22817 0.71 0.642365
Target:  5'- cGCUCGUCca-GGCG-CCGGCCGuGAGUu -3'
miRNA:   3'- -CGAGCAGuagCUGCuGGUUGGU-UUCG- -5'
10642 5' -49.3 NC_002702.1 + 21080 1.14 0.001155
Target:  5'- gGCUCGUCAUCGACGACCAACCAAAGCc -3'
miRNA:   3'- -CGAGCAGUAGCUGCUGGUUGGUUUCG- -5'
10642 5' -49.3 NC_002702.1 + 21027 0.8 0.228443
Target:  5'- gGUUgGUCGUCGAUGACgAGCCuGGGCu -3'
miRNA:   3'- -CGAgCAGUAGCUGCUGgUUGGuUUCG- -5'
10642 5' -49.3 NC_002702.1 + 7297 0.68 0.829136
Target:  5'- aCUCGUCcUCuguuguaGACGACCA--CAGAGCc -3'
miRNA:   3'- cGAGCAGuAG-------CUGCUGGUugGUUUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.