Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10653 | 5' | -50.9 | NC_002702.1 | + | 30461 | 0.66 | 0.783493 |
Target: 5'- gUUUGGAGGCagagggaguUGUUGAGGguGAUGAa -3' miRNA: 3'- gAGACCUCCGgu-------ACAACUCU--UUGCUg -5' |
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10653 | 5' | -50.9 | NC_002702.1 | + | 16845 | 0.67 | 0.728048 |
Target: 5'- gCUUUGGGGGCCAagggGUUGu-AAGCGGu -3' miRNA: 3'- -GAGACCUCCGGUa---CAACucUUUGCUg -5' |
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10653 | 5' | -50.9 | NC_002702.1 | + | 12886 | 0.69 | 0.634269 |
Target: 5'- aUCUGGgugaaAGGCCAUGUUGguguacuucccGGgcAUGACu -3' miRNA: 3'- gAGACC-----UCCGGUACAAC-----------UCuuUGCUG- -5' |
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10653 | 5' | -50.9 | NC_002702.1 | + | 19760 | 0.74 | 0.324306 |
Target: 5'- aUCUGGGGGCgGUGUgagcgaaaguacGAGGAAUGAUg -3' miRNA: 3'- gAGACCUCCGgUACAa-----------CUCUUUGCUG- -5' |
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10653 | 5' | -50.9 | NC_002702.1 | + | 8145 | 0.77 | 0.228459 |
Target: 5'- -aCUGGAGGCCAUGgggGAGcucAGCGAg -3' miRNA: 3'- gaGACCUCCGGUACaa-CUCu--UUGCUg -5' |
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10653 | 5' | -50.9 | NC_002702.1 | + | 18185 | 1.12 | 0.000857 |
Target: 5'- aCUCUGGAGGCCAUGUUGAGAAACGACa -3' miRNA: 3'- -GAGACCUCCGGUACAACUCUUUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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