miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1068 3' -56 NC_000929.1 + 28213 0.66 0.485666
Target:  5'- aCCAGCUCucCGGcGGCauUGCUGGUc -3'
miRNA:   3'- -GGUCGAGuaGUCaCCGacACGACCGu -5'
1068 3' -56 NC_000929.1 + 13052 0.67 0.433988
Target:  5'- aCCGGUUCAUugCGG-GGCUGUGCUuccccgauaucGGUc -3'
miRNA:   3'- -GGUCGAGUA--GUCaCCGACACGA-----------CCGu -5'
1068 3' -56 NC_000929.1 + 9461 0.68 0.418134
Target:  5'- uUCuGCUCGUCAGUGGCcugauuuuuuaucgGUGguguuaCUGGCGc -3'
miRNA:   3'- -GGuCGAGUAGUCACCGa-------------CAC------GACCGU- -5'
1068 3' -56 NC_000929.1 + 14331 0.69 0.349622
Target:  5'- gCAGgUCAUCAaguGUGGuCUGaUGCcUGGCAa -3'
miRNA:   3'- gGUCgAGUAGU---CACC-GAC-ACG-ACCGU- -5'
1068 3' -56 NC_000929.1 + 27178 0.71 0.256374
Target:  5'- uCCAGUgccgcaGUCAGUGcCUG-GCUGGCAg -3'
miRNA:   3'- -GGUCGag----UAGUCACcGACaCGACCGU- -5'
1068 3' -56 NC_000929.1 + 28252 1.11 0.000288
Target:  5'- aCCAGCUCAUCAGUGGCUGUGCUGGCAg -3'
miRNA:   3'- -GGUCGAGUAGUCACCGACACGACCGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.