miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 3' -55.5 NC_002794.1 + 149623 0.66 0.959743
Target:  5'- gGACguGGGACgcgCGaUAC-GCGUGGAUGc -3'
miRNA:   3'- -CUGguCCCUGa--GC-AUGaCGCGCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 91113 0.66 0.957584
Target:  5'- cGCCGGGcaGCUgGUGCcgugcguggaggagGCGCGGACGg -3'
miRNA:   3'- cUGGUCCc-UGAgCAUGa-------------CGCGCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 104625 0.66 0.956101
Target:  5'- cGGCCAGcaGCUCGUugUcgcGCGcCGAGCa -3'
miRNA:   3'- -CUGGUCccUGAGCAugA---CGC-GCUUGc -5'
10698 3' -55.5 NC_002794.1 + 89472 0.66 0.949818
Target:  5'- -uCCGGGGACUcCGgcCUGCggugucucccgcgauGCGGGCa -3'
miRNA:   3'- cuGGUCCCUGA-GCauGACG---------------CGCUUGc -5'
10698 3' -55.5 NC_002794.1 + 44241 0.66 0.948159
Target:  5'- uGCCGGGcGGCUCGg--UGC-CGGGCGg -3'
miRNA:   3'- cUGGUCC-CUGAGCaugACGcGCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 120006 0.66 0.943853
Target:  5'- cGACCAGGcGAucgaaCUCGaggACUcGCGgGGACGu -3'
miRNA:   3'- -CUGGUCC-CU-----GAGCa--UGA-CGCgCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 118162 0.67 0.939319
Target:  5'- gGGCuCAGGGugUCGUAg-GCgGCGAcGCGc -3'
miRNA:   3'- -CUG-GUCCCugAGCAUgaCG-CGCU-UGC- -5'
10698 3' -55.5 NC_002794.1 + 111867 0.67 0.939319
Target:  5'- cGCCAGGGcCUUGUAgcGCGCGGu-- -3'
miRNA:   3'- cUGGUCCCuGAGCAUgaCGCGCUugc -5'
10698 3' -55.5 NC_002794.1 + 189023 0.67 0.936489
Target:  5'- aGGCCAGGaGccGCUCGaccgccagcggcggGCUGCGCGucGCGu -3'
miRNA:   3'- -CUGGUCC-C--UGAGCa-------------UGACGCGCu-UGC- -5'
10698 3' -55.5 NC_002794.1 + 97061 0.67 0.918888
Target:  5'- --gCAGGGuacggacaUCGUGCgcuucGCGCGGACGa -3'
miRNA:   3'- cugGUCCCug------AGCAUGa----CGCGCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 5165 0.67 0.917207
Target:  5'- aGACCAGGGcuuuccagaucaugGCggUCGUuucCUGCGgGAACa -3'
miRNA:   3'- -CUGGUCCC--------------UG--AGCAu--GACGCgCUUGc -5'
10698 3' -55.5 NC_002794.1 + 133268 0.68 0.907291
Target:  5'- cACCGGGaGACUCGcg-UGUGCGcGCGg -3'
miRNA:   3'- cUGGUCC-CUGAGCaugACGCGCuUGC- -5'
10698 3' -55.5 NC_002794.1 + 115958 0.68 0.907291
Target:  5'- cGCCGGGGAC-CGUGg-GgGgGAGCGg -3'
miRNA:   3'- cUGGUCCCUGaGCAUgaCgCgCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 85350 0.68 0.901151
Target:  5'- aACCcgggggGGGGGCaucaugUCGUGCuUGUGCGAACa -3'
miRNA:   3'- cUGG------UCCCUG------AGCAUG-ACGCGCUUGc -5'
10698 3' -55.5 NC_002794.1 + 44136 0.68 0.900525
Target:  5'- aGugUAGGGcccGCUCGagagaagugcacgUGCacgGCGCGAGCGg -3'
miRNA:   3'- -CugGUCCC---UGAGC-------------AUGa--CGCGCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 120135 0.68 0.888202
Target:  5'- cGACCGGGGACgg--GCcgGUGcCGGACGa -3'
miRNA:   3'- -CUGGUCCCUGagcaUGa-CGC-GCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 149345 0.68 0.888202
Target:  5'- cGGCCGGGGuCgCGggg-GCGUGGACGg -3'
miRNA:   3'- -CUGGUCCCuGaGCaugaCGCGCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 95737 0.69 0.867154
Target:  5'- aGACCGuuggacGGGGCUgGUACUcGCG-GGGCGg -3'
miRNA:   3'- -CUGGU------CCCUGAgCAUGA-CGCgCUUGC- -5'
10698 3' -55.5 NC_002794.1 + 126480 0.7 0.793688
Target:  5'- uGGCCuGGGGACUguUGgGCUGCGCGAu-- -3'
miRNA:   3'- -CUGG-UCCCUGA--GCaUGACGCGCUugc -5'
10698 3' -55.5 NC_002794.1 + 147215 0.7 0.793688
Target:  5'- gGGCCGGGGcCggggCGUug-GCGCGAugGg -3'
miRNA:   3'- -CUGGUCCCuGa---GCAugaCGCGCUugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.