Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10698 | 3' | -55.5 | NC_002794.1 | + | 120006 | 0.66 | 0.943853 |
Target: 5'- cGACCAGGcGAucgaaCUCGaggACUcGCGgGGACGu -3' miRNA: 3'- -CUGGUCC-CU-----GAGCa--UGA-CGCgCUUGC- -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 44241 | 0.66 | 0.948159 |
Target: 5'- uGCCGGGcGGCUCGg--UGC-CGGGCGg -3' miRNA: 3'- cUGGUCC-CUGAGCaugACGcGCUUGC- -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 89472 | 0.66 | 0.949818 |
Target: 5'- -uCCGGGGACUcCGgcCUGCggugucucccgcgauGCGGGCa -3' miRNA: 3'- cuGGUCCCUGA-GCauGACG---------------CGCUUGc -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 104625 | 0.66 | 0.956101 |
Target: 5'- cGGCCAGcaGCUCGUugUcgcGCGcCGAGCa -3' miRNA: 3'- -CUGGUCccUGAGCAugA---CGC-GCUUGc -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 91113 | 0.66 | 0.957584 |
Target: 5'- cGCCGGGcaGCUgGUGCcgugcguggaggagGCGCGGACGg -3' miRNA: 3'- cUGGUCCc-UGAgCAUGa-------------CGCGCUUGC- -5' |
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10698 | 3' | -55.5 | NC_002794.1 | + | 149623 | 0.66 | 0.959743 |
Target: 5'- gGACguGGGACgcgCGaUAC-GCGUGGAUGc -3' miRNA: 3'- -CUGguCCCUGa--GC-AUGaCGCGCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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