Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10698 | 5' | -59.1 | NC_002794.1 | + | 851 | 0.67 | 0.790472 |
Target: 5'- uGCGUUC-GGCCcaGCGCGCG-CCCGc -3' miRNA: 3'- cCGUAGGaCCGGugUGUGCGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 115935 | 0.67 | 0.790472 |
Target: 5'- cGGCGggCC-GGcCCGC-CGCGUGUCgCCGg -3' miRNA: 3'- -CCGUa-GGaCC-GGUGuGUGCGCAG-GGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 106948 | 0.67 | 0.790472 |
Target: 5'- cGGCGgcgCCUGGagACACGCGuCGcCUCGc -3' miRNA: 3'- -CCGUa--GGACCggUGUGUGC-GCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 184460 | 0.67 | 0.789599 |
Target: 5'- uGCcgCCcgcgGGCCGCgcgaacgGCGCGCGgggcCCCGg -3' miRNA: 3'- cCGuaGGa---CCGGUG-------UGUGCGCa---GGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 89580 | 0.67 | 0.781686 |
Target: 5'- cGGUGUCaucGGCCGuCGagcCGCGCGaUCCCGg -3' miRNA: 3'- -CCGUAGga-CCGGU-GU---GUGCGC-AGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 34940 | 0.67 | 0.781686 |
Target: 5'- cGGCuGUCCccGGCC-CGC-CGCGaCCCGc -3' miRNA: 3'- -CCG-UAGGa-CCGGuGUGuGCGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 103088 | 0.67 | 0.781686 |
Target: 5'- aGCGUCgC-GGcCCGCGCGCGCGgucacgacUCCCa -3' miRNA: 3'- cCGUAG-GaCC-GGUGUGUGCGC--------AGGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 99535 | 0.67 | 0.7808 |
Target: 5'- cGUAUCUgugcgGGCCGCggaaaccGCGCGCG-CCCu -3' miRNA: 3'- cCGUAGGa----CCGGUG-------UGUGCGCaGGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 71107 | 0.68 | 0.763752 |
Target: 5'- cGGCggCCUGGCCGgAgAgGCG-CUCGu -3' miRNA: 3'- -CCGuaGGACCGGUgUgUgCGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 113874 | 0.68 | 0.763752 |
Target: 5'- aGGCGcgCUcGGCCGCgGCGCGCGUCg-- -3' miRNA: 3'- -CCGUa-GGaCCGGUG-UGUGCGCAGggc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 68926 | 0.68 | 0.754621 |
Target: 5'- cGGCGUCCUcgucgcccgcgGGCCGCGgCGCcgGCGccucUCCCu -3' miRNA: 3'- -CCGUAGGA-----------CCGGUGU-GUG--CGC----AGGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 172407 | 0.68 | 0.754621 |
Target: 5'- aGUAUUCUGGCCAUccaGCGCGaCCUa -3' miRNA: 3'- cCGUAGGACCGGUGug-UGCGCaGGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 136006 | 0.68 | 0.754621 |
Target: 5'- gGGUccaGUCCgcUGGUCACuCGCGUGcCCCGu -3' miRNA: 3'- -CCG---UAGG--ACCGGUGuGUGCGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 54138 | 0.68 | 0.754621 |
Target: 5'- cGGCAcguUgUUGGCCA-GC-CGCGUCCCc -3' miRNA: 3'- -CCGU---AgGACCGGUgUGuGCGCAGGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 194763 | 0.68 | 0.753702 |
Target: 5'- cGGCGacugcUCCgagaacGGCCgGCACGCGCGcagcggcUCCCa -3' miRNA: 3'- -CCGU-----AGGa-----CCGG-UGUGUGCGC-------AGGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 53603 | 0.68 | 0.736069 |
Target: 5'- cGGCGUCaccgGGCCGC-CGCaGCGUCggaCGg -3' miRNA: 3'- -CCGUAGga--CCGGUGuGUG-CGCAGg--GC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 195111 | 0.68 | 0.726665 |
Target: 5'- cGGCGUCUcgUGcGCCcgcgGCGCGCGCGggCUCGc -3' miRNA: 3'- -CCGUAGG--AC-CGG----UGUGUGCGCa-GGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 119541 | 0.69 | 0.717186 |
Target: 5'- -uCGUCCgcGGCCGuCGCcggccACGUGUCCCGg -3' miRNA: 3'- ccGUAGGa-CCGGU-GUG-----UGCGCAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 1023 | 0.69 | 0.717186 |
Target: 5'- uGGCAUCC-GGcCCGCAcCACGCc-CCCu -3' miRNA: 3'- -CCGUAGGaCC-GGUGU-GUGCGcaGGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 65367 | 0.69 | 0.707641 |
Target: 5'- cGGCGcCCUGacGCCACACG-GCGcCCCc -3' miRNA: 3'- -CCGUaGGAC--CGGUGUGUgCGCaGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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