miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 38190 0.7 0.620025
Target:  5'- aGGCGuUCCUGGUCucgucguuCGCGCGCGcgaCCGa -3'
miRNA:   3'- -CCGU-AGGACCGGu-------GUGUGCGCag-GGC- -5'
10698 5' -59.1 NC_002794.1 + 38589 0.76 0.321665
Target:  5'- cGGCcgCCUccucccggacgagaGGCCggACGgGCGCGUCCCGa -3'
miRNA:   3'- -CCGuaGGA--------------CCGG--UGUgUGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 40575 0.67 0.824234
Target:  5'- cGcCGUCCUGGCCGCGgGCccucuccuccgaGuCGUCgCCGg -3'
miRNA:   3'- cC-GUAGGACCGGUGUgUG------------C-GCAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 43738 0.67 0.807644
Target:  5'- cGGCcuUCUUGGCCAC-CugGgugcCGUUCCGc -3'
miRNA:   3'- -CCGu-AGGACCGGUGuGugC----GCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 46881 0.69 0.668952
Target:  5'- uGCcgGUCCUGGCCA-AC-CGCGUCgCGa -3'
miRNA:   3'- cCG--UAGGACCGGUgUGuGCGCAGgGC- -5'
10698 5' -59.1 NC_002794.1 + 49744 0.66 0.832292
Target:  5'- uGGCGagcCCguaGGCCGCucGCACGCG-CUCGu -3'
miRNA:   3'- -CCGUa--GGa--CCGGUG--UGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 53234 0.66 0.832292
Target:  5'- cGGUccGUCCUcGGCCcgcCGCGCcgGCGUCgCCGc -3'
miRNA:   3'- -CCG--UAGGA-CCGGu--GUGUG--CGCAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 53603 0.68 0.736069
Target:  5'- cGGCGUCaccgGGCCGC-CGCaGCGUCggaCGg -3'
miRNA:   3'- -CCGUAGga--CCGGUGuGUG-CGCAGg--GC- -5'
10698 5' -59.1 NC_002794.1 + 54138 0.68 0.754621
Target:  5'- cGGCAcguUgUUGGCCA-GC-CGCGUCCCc -3'
miRNA:   3'- -CCGU---AgGACCGGUgUGuGCGCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 54339 0.71 0.58099
Target:  5'- cGGCA-CCUGG-UACGCGuucCGCGUCUCGa -3'
miRNA:   3'- -CCGUaGGACCgGUGUGU---GCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 55626 0.66 0.840183
Target:  5'- uGCAcgCUGGCCA-GCACGCGggCCGg -3'
miRNA:   3'- cCGUagGACCGGUgUGUGCGCagGGC- -5'
10698 5' -59.1 NC_002794.1 + 57422 0.7 0.659191
Target:  5'- cGGCGUgCUGGUCgGCACG-GCG-CCCGu -3'
miRNA:   3'- -CCGUAgGACCGG-UGUGUgCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 57454 0.66 0.847901
Target:  5'- aGCA-CCUGcuCCACGCGCuGCG-CCCGc -3'
miRNA:   3'- cCGUaGGACc-GGUGUGUG-CGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 57569 0.67 0.811011
Target:  5'- cGcCAUCCUGGCCgACuucgagucacaggccGCGCGCGUggccaCCGa -3'
miRNA:   3'- cC-GUAGGACCGG-UG---------------UGUGCGCAg----GGC- -5'
10698 5' -59.1 NC_002794.1 + 58452 0.75 0.360429
Target:  5'- uGCG-CCUGGCCGCGCugGCGcugcacgaCCCGc -3'
miRNA:   3'- cCGUaGGACCGGUGUGugCGCa-------GGGC- -5'
10698 5' -59.1 NC_002794.1 + 59214 0.73 0.486478
Target:  5'- cGGCGUCUcGGCCGCgGCGCGCGagCUCu -3'
miRNA:   3'- -CCGUAGGaCCGGUG-UGUGCGCa-GGGc -5'
10698 5' -59.1 NC_002794.1 + 60647 0.69 0.678684
Target:  5'- cGGCGgcgCC-GGCCACccgGCGCGCGcCgCCGc -3'
miRNA:   3'- -CCGUa--GGaCCGGUG---UGUGCGCaG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 60965 0.66 0.840183
Target:  5'- aGCG-CCgGGCCuACGCGCGCcUCCgGa -3'
miRNA:   3'- cCGUaGGaCCGG-UGUGUGCGcAGGgC- -5'
10698 5' -59.1 NC_002794.1 + 65367 0.69 0.707641
Target:  5'- cGGCGcCCUGacGCCACACG-GCGcCCCc -3'
miRNA:   3'- -CCGUaGGAC--CGGUGUGUgCGCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 67222 0.66 0.832292
Target:  5'- cGGCG-CCgGGCgGCuaAC-CGCGUCUCGa -3'
miRNA:   3'- -CCGUaGGaCCGgUG--UGuGCGCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.