miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 633 0.7 0.633741
Target:  5'- uGGCGUUCgccucccguccccGCCGCGCAgCGCGUCUCGc -3'
miRNA:   3'- -CCGUAGGac-----------CGGUGUGU-GCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 851 0.67 0.790472
Target:  5'- uGCGUUC-GGCCcaGCGCGCG-CCCGc -3'
miRNA:   3'- cCGUAGGaCCGGugUGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 1023 0.69 0.717186
Target:  5'- uGGCAUCC-GGcCCGCAcCACGCc-CCCu -3'
miRNA:   3'- -CCGUAGGaCC-GGUGU-GUGCGcaGGGc -5'
10698 5' -59.1 NC_002794.1 + 2609 0.79 0.215119
Target:  5'- uGGCA-CCUacccGGCCGCcgGCGCGCGUCCCc -3'
miRNA:   3'- -CCGUaGGA----CCGGUG--UGUGCGCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 10987 0.67 0.799127
Target:  5'- uGC-UCCgaGGCCGCAaguggacCGUGUCCCGc -3'
miRNA:   3'- cCGuAGGa-CCGGUGUgu-----GCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 12391 0.66 0.847901
Target:  5'- cGCucgCCUGGCCGacaacCGCACGCGga-CGg -3'
miRNA:   3'- cCGua-GGACCGGU-----GUGUGCGCaggGC- -5'
10698 5' -59.1 NC_002794.1 + 12653 0.67 0.799127
Target:  5'- gGGUA-CCgcaccGCCACGCugGUGaUCCCGc -3'
miRNA:   3'- -CCGUaGGac---CGGUGUGugCGC-AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 14197 0.7 0.659191
Target:  5'- aGCGUCCcGGCC-CGCugGcCGcCCCa -3'
miRNA:   3'- cCGUAGGaCCGGuGUGugC-GCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 19305 0.71 0.571299
Target:  5'- cGCGUCgCUGaccgcccacGCCGCGCugGCGaCCCGc -3'
miRNA:   3'- cCGUAG-GAC---------CGGUGUGugCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 22865 0.75 0.375879
Target:  5'- cGGaCGUCCcGGCCGuCGCGCGCuUCCCu -3'
miRNA:   3'- -CC-GUAGGaCCGGU-GUGUGCGcAGGGc -5'
10698 5' -59.1 NC_002794.1 + 23711 0.66 0.832292
Target:  5'- aGCGUCCcgaaCCGCGCGCGgCGggCCCGa -3'
miRNA:   3'- cCGUAGGacc-GGUGUGUGC-GCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 30068 0.66 0.832292
Target:  5'- cGGgGUCC-GGUCGCccggucgacgagGCGCGCGgccggUCCCGa -3'
miRNA:   3'- -CCgUAGGaCCGGUG------------UGUGCGC-----AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 33317 0.7 0.639619
Target:  5'- cGGCGUCCauccGCCACACGCuGCaGUCgCUGg -3'
miRNA:   3'- -CCGUAGGac--CGGUGUGUG-CG-CAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 34940 0.67 0.781686
Target:  5'- cGGCuGUCCccGGCC-CGC-CGCGaCCCGc -3'
miRNA:   3'- -CCG-UAGGa-CCGGuGUGuGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 35728 0.7 0.610237
Target:  5'- uGGCcUCC-GGCgGC-CGCGCGUCUCa -3'
miRNA:   3'- -CCGuAGGaCCGgUGuGUGCGCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 36263 0.69 0.688382
Target:  5'- uGGCGUCgUGua-ACGC-CGCGUCCCGc -3'
miRNA:   3'- -CCGUAGgACcggUGUGuGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 36353 0.66 0.832292
Target:  5'- cGGCGUgCgcGGCCACcgggUGCGCG-CCCGc -3'
miRNA:   3'- -CCGUAgGa-CCGGUGu---GUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 36589 0.67 0.799127
Target:  5'- aGGCgGUCCgcguGCCACACGaGCGccCCCGa -3'
miRNA:   3'- -CCG-UAGGac--CGGUGUGUgCGCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 37045 0.67 0.799127
Target:  5'- gGGUGUCCUGcCCGuCGCGCuCGUCCuCGu -3'
miRNA:   3'- -CCGUAGGACcGGU-GUGUGcGCAGG-GC- -5'
10698 5' -59.1 NC_002794.1 + 37548 0.7 0.639619
Target:  5'- aGCcgCCggaggGGCCACgAC-CGCGUCuCCGa -3'
miRNA:   3'- cCGuaGGa----CCGGUG-UGuGCGCAG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.