miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 195402 1.11 0.001576
Target:  5'- cGGCAUCCUGGCCACACACGCGUCCCGa -3'
miRNA:   3'- -CCGUAGGACCGGUGUGUGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 2609 0.79 0.215119
Target:  5'- uGGCA-CCUacccGGCCGCcgGCGCGCGUCCCc -3'
miRNA:   3'- -CCGUaGGA----CCGGUG--UGUGCGCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 38589 0.76 0.321665
Target:  5'- cGGCcgCCUccucccggacgagaGGCCggACGgGCGCGUCCCGa -3'
miRNA:   3'- -CCGuaGGA--------------CCGG--UGUgUGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 187254 0.75 0.345426
Target:  5'- cGGCugaaGUCCU-GCCGCuCGCGCGUCUCGa -3'
miRNA:   3'- -CCG----UAGGAcCGGUGuGUGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 58452 0.75 0.360429
Target:  5'- uGCG-CCUGGCCGCGCugGCGcugcacgaCCCGc -3'
miRNA:   3'- cCGUaGGACCGGUGUGugCGCa-------GGGC- -5'
10698 5' -59.1 NC_002794.1 + 22865 0.75 0.375879
Target:  5'- cGGaCGUCCcGGCCGuCGCGCGCuUCCCu -3'
miRNA:   3'- -CC-GUAGGaCCGGU-GUGUGCGcAGGGc -5'
10698 5' -59.1 NC_002794.1 + 114486 0.73 0.459511
Target:  5'- cGCGUaCCcGGuCCACGCGCGCcggaccGUCCCGg -3'
miRNA:   3'- cCGUA-GGaCC-GGUGUGUGCG------CAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 115334 0.73 0.465733
Target:  5'- cGGCGUCCgGGCCgcucgGCACguccaggcgacagaGCGCGUCCa- -3'
miRNA:   3'- -CCGUAGGaCCGG-----UGUG--------------UGCGCAGGgc -5'
10698 5' -59.1 NC_002794.1 + 146002 0.73 0.468414
Target:  5'- cGGCcgCCggGGCCGgAgACGCcGUCCCa -3'
miRNA:   3'- -CCGuaGGa-CCGGUgUgUGCG-CAGGGc -5'
10698 5' -59.1 NC_002794.1 + 59214 0.73 0.486478
Target:  5'- cGGCGUCUcGGCCGCgGCGCGCGagCUCu -3'
miRNA:   3'- -CCGUAGGaCCGGUG-UGUGCGCa-GGGc -5'
10698 5' -59.1 NC_002794.1 + 143874 0.72 0.514172
Target:  5'- cGGCGUCaaauaUGGCCuCGCcgaGCGUCCUGu -3'
miRNA:   3'- -CCGUAGg----ACCGGuGUGug-CGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 144044 0.72 0.532987
Target:  5'- cGGCG-CCUGGCCGCcgucgacuucucGCccgACGCGUCCg- -3'
miRNA:   3'- -CCGUaGGACCGGUG------------UG---UGCGCAGGgc -5'
10698 5' -59.1 NC_002794.1 + 19305 0.71 0.571299
Target:  5'- cGCGUCgCUGaccgcccacGCCGCGCugGCGaCCCGc -3'
miRNA:   3'- cCGUAG-GAC---------CGGUGUGugCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 54339 0.71 0.58099
Target:  5'- cGGCA-CCUGG-UACGCGuucCGCGUCUCGa -3'
miRNA:   3'- -CCGUaGGACCgGUGUGU---GCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 112232 0.71 0.587793
Target:  5'- gGGCGUCCagGGCCGCcgcgaACGCcgccggcgggaccgGCGUCUCGu -3'
miRNA:   3'- -CCGUAGGa-CCGGUG-----UGUG--------------CGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 82990 0.7 0.610237
Target:  5'- cGCugaaCCUGGCgC-CGCACGCG-CCCGa -3'
miRNA:   3'- cCGua--GGACCG-GuGUGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 35728 0.7 0.610237
Target:  5'- uGGCcUCC-GGCgGC-CGCGCGUCUCa -3'
miRNA:   3'- -CCGuAGGaCCGgUGuGUGCGCAGGGc -5'
10698 5' -59.1 NC_002794.1 + 147855 0.7 0.610237
Target:  5'- uGCAUCCUGGgCGuCGuCGCGCaGUCCuCGg -3'
miRNA:   3'- cCGUAGGACCgGU-GU-GUGCG-CAGG-GC- -5'
10698 5' -59.1 NC_002794.1 + 38190 0.7 0.620025
Target:  5'- aGGCGuUCCUGGUCucgucguuCGCGCGCGcgaCCGa -3'
miRNA:   3'- -CCGU-AGGACCGGu-------GUGUGCGCag-GGC- -5'
10698 5' -59.1 NC_002794.1 + 80504 0.7 0.629822
Target:  5'- cGGCAcgucUUCUGcGCCGCgGCGCGCGacgCCUGg -3'
miRNA:   3'- -CCGU----AGGAC-CGGUG-UGUGCGCa--GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.