miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 141395 0.67 0.879201
Target:  5'- --cGUUCGGGgGGCucGGCGACgacgaugaccucgggGGCGGCg -3'
miRNA:   3'- ugaCAGGCUCgUCG--UCGUUG---------------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 44423 0.67 0.876373
Target:  5'- gGCg--CCGAGCGGCucgaCGACAcCGGCg -3'
miRNA:   3'- -UGacaGGCUCGUCGuc--GUUGUcGCCG- -5'
10699 3' -56.8 NC_002794.1 + 153120 0.67 0.876373
Target:  5'- gACU--UCGGGUucGGUGGCGGCAGCGGg -3'
miRNA:   3'- -UGAcaGGCUCG--UCGUCGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 188361 0.67 0.876373
Target:  5'- --cGUCCGGcCGGCGGCGGCcgAG-GGCg -3'
miRNA:   3'- ugaCAGGCUcGUCGUCGUUG--UCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 121373 0.67 0.876373
Target:  5'- --cGUCCGAGcCGGCcGCcgccggGACcGCGGCc -3'
miRNA:   3'- ugaCAGGCUC-GUCGuCG------UUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 137930 0.67 0.876373
Target:  5'- cGCgGUCgaUGAGCuggaGGCAGCGGCGGauGCg -3'
miRNA:   3'- -UGaCAG--GCUCG----UCGUCGUUGUCgcCG- -5'
10699 3' -56.8 NC_002794.1 + 113133 0.67 0.872066
Target:  5'- -gUGUCCGAgaggaagggcgggcGCGuCAGCGuguagcgcgcgcggGCGGCGGCg -3'
miRNA:   3'- ugACAGGCU--------------CGUcGUCGU--------------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 184803 0.67 0.869153
Target:  5'- ---cUCCGGGCucAGCAGCGucACGG-GGCa -3'
miRNA:   3'- ugacAGGCUCG--UCGUCGU--UGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 120067 0.67 0.869153
Target:  5'- cGCggaggCCGAcGCGGCGGUGGCGGCGa- -3'
miRNA:   3'- -UGaca--GGCU-CGUCGUCGUUGUCGCcg -5'
10699 3' -56.8 NC_002794.1 + 110623 0.67 0.869153
Target:  5'- ------gGAGCcGCGGCGccGCGGCGGCg -3'
miRNA:   3'- ugacaggCUCGuCGUCGU--UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 142384 0.67 0.869153
Target:  5'- ------gGAGCGGCGGaGACGGCGGUg -3'
miRNA:   3'- ugacaggCUCGUCGUCgUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 107529 0.67 0.869153
Target:  5'- gACgg-CCG-GC-GCGGCGcCGGCGGCg -3'
miRNA:   3'- -UGacaGGCuCGuCGUCGUuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 107870 0.67 0.869153
Target:  5'- cACUGcaUCgCGgaGGCGGCgcGGCGGguGCGGCu -3'
miRNA:   3'- -UGAC--AG-GC--UCGUCG--UCGUUguCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 150444 0.67 0.869153
Target:  5'- --aGUCCGGGCGGguGCGGauccCGGaaGGCu -3'
miRNA:   3'- ugaCAGGCUCGUCguCGUU----GUCg-CCG- -5'
10699 3' -56.8 NC_002794.1 + 112535 0.67 0.861724
Target:  5'- --gGUCCaagaAGUAGCGGUAGCGG-GGCu -3'
miRNA:   3'- ugaCAGGc---UCGUCGUCGUUGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 123267 0.67 0.861724
Target:  5'- gGCUgGUCCGGGCcGCGGUcgUcGCGGg -3'
miRNA:   3'- -UGA-CAGGCUCGuCGUCGuuGuCGCCg -5'
10699 3' -56.8 NC_002794.1 + 152629 0.67 0.861724
Target:  5'- cGCUcGUCCuGGGCGGC-GUucgAGCGGCg -3'
miRNA:   3'- -UGA-CAGG-CUCGUCGuCGuugUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 118255 0.67 0.861724
Target:  5'- gGCUGgaggucggCCgGGGCGGCGGCGcCGGCGuCg -3'
miRNA:   3'- -UGACa-------GG-CUCGUCGUCGUuGUCGCcG- -5'
10699 3' -56.8 NC_002794.1 + 182941 0.67 0.861724
Target:  5'- --aGUCCGGcGCcgGGCucgAGcCGACGGCGGCc -3'
miRNA:   3'- ugaCAGGCU-CG--UCG---UC-GUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 105269 0.67 0.854092
Target:  5'- gGCUGUagUCGAGCAGCcAGCGuugcuCGGgguccCGGCu -3'
miRNA:   3'- -UGACA--GGCUCGUCG-UCGUu----GUC-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.