miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 31051 0.71 0.640094
Target:  5'- ------aGGGCAGCGGC-ACGGCGGCc -3'
miRNA:   3'- ugacaggCUCGUCGUCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 32836 0.71 0.650214
Target:  5'- cGCgg-CCGGcucauCGGUAGCGGCAGCGGCc -3'
miRNA:   3'- -UGacaGGCUc----GUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 32868 0.82 0.165065
Target:  5'- aGCcGg-CGGGCGGCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGaCagGCUCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 32913 0.71 0.650214
Target:  5'- --aGU-CGGGCGGCAGCAGguCGGCGGg -3'
miRNA:   3'- ugaCAgGCUCGUCGUCGUU--GUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 36946 0.66 0.890168
Target:  5'- --aGUCCGcgucgcGCGGCGGCAGgCAGuCGcGCa -3'
miRNA:   3'- ugaCAGGCu-----CGUCGUCGUU-GUC-GC-CG- -5'
10699 3' -56.8 NC_002794.1 + 37338 0.66 0.890168
Target:  5'- --gGcCCGGGCGGCAGCA--GGUcgGGCc -3'
miRNA:   3'- ugaCaGGCUCGUCGUCGUugUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 37430 0.72 0.589553
Target:  5'- cGCcGUCCGcAGCAGCAGCAcGCAcUGGUc -3'
miRNA:   3'- -UGaCAGGC-UCGUCGUCGU-UGUcGCCG- -5'
10699 3' -56.8 NC_002794.1 + 37731 0.75 0.436318
Target:  5'- -----gCGAGCGGCGGCGccgccgGCGGCGGCg -3'
miRNA:   3'- ugacagGCUCGUCGUCGU------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 37877 0.8 0.227422
Target:  5'- --cGUCuCGGGCGGCGGgGGCGGUGGCg -3'
miRNA:   3'- ugaCAG-GCUCGUCGUCgUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 40466 0.68 0.813119
Target:  5'- cGCUGUCCcuucGGGCGGCucaucgAACGGcCGGCg -3'
miRNA:   3'- -UGACAGG----CUCGUCGucg---UUGUC-GCCG- -5'
10699 3' -56.8 NC_002794.1 + 43005 0.68 0.825038
Target:  5'- cACcgGUCCGAGUAGCuccGCAGgucgucggccuccauCGcGCGGCa -3'
miRNA:   3'- -UGa-CAGGCUCGUCGu--CGUU---------------GU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 44053 0.68 0.821666
Target:  5'- --gGUCC--GCGGCAGCGACAGaaGCc -3'
miRNA:   3'- ugaCAGGcuCGUCGUCGUUGUCgcCG- -5'
10699 3' -56.8 NC_002794.1 + 44234 0.68 0.813119
Target:  5'- gGCUcGgugCCGGGCGGCucGguGCcgGGCGGCu -3'
miRNA:   3'- -UGA-Ca--GGCUCGUCGu-CguUG--UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 44423 0.67 0.876373
Target:  5'- gGCg--CCGAGCGGCucgaCGACAcCGGCg -3'
miRNA:   3'- -UGacaGGCUCGUCGuc--GUUGUcGCCG- -5'
10699 3' -56.8 NC_002794.1 + 46309 0.73 0.539757
Target:  5'- ---uUCCGAGCgcGGCGGCGACGGCGcCg -3'
miRNA:   3'- ugacAGGCUCG--UCGUCGUUGUCGCcG- -5'
10699 3' -56.8 NC_002794.1 + 46757 0.68 0.830044
Target:  5'- cGCUGgaUCGA-CGGCgacuucgaccccAGCGGCGGCGGCg -3'
miRNA:   3'- -UGACa-GGCUcGUCG------------UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 47317 0.66 0.896735
Target:  5'- ---uUCCGAGgguggggugccCGGCucccGCGGCGGCGGCc -3'
miRNA:   3'- ugacAGGCUC-----------GUCGu---CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 48067 0.66 0.88338
Target:  5'- cGCUGauggCCGGcCAGCGGgAGCAGCcGCc -3'
miRNA:   3'- -UGACa---GGCUcGUCGUCgUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 49006 0.68 0.830044
Target:  5'- aGCUcucCCGcGCcGCGGCGGCcGCGGCg -3'
miRNA:   3'- -UGAca-GGCuCGuCGUCGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 49055 0.67 0.846264
Target:  5'- --cGUCCaGGGCGcGCAGCAcgACucGCGGUa -3'
miRNA:   3'- ugaCAGG-CUCGU-CGUCGU--UGu-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.