miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 257 0.66 0.915069
Target:  5'- gACUGccgCCGcGCGcGCGGacgcgagGACGGCGGCc -3'
miRNA:   3'- -UGACa--GGCuCGU-CGUCg------UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 9095 0.72 0.589553
Target:  5'- gGCga-CCGGG-AGCAGCAACAGCaGCa -3'
miRNA:   3'- -UGacaGGCUCgUCGUCGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 12212 0.67 0.854092
Target:  5'- gACgugCCGgcGGCgucGGCGGCGcCGGCGGCg -3'
miRNA:   3'- -UGacaGGC--UCG---UCGUCGUuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 13266 0.75 0.436318
Target:  5'- gGCUGUggUgGAGCGGCcGCuguuGACGGCGGCa -3'
miRNA:   3'- -UGACA--GgCUCGUCGuCG----UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 14488 0.76 0.393197
Target:  5'- cGCUGUUCGcGGCGGCGGCccGCGcucGCGGCg -3'
miRNA:   3'- -UGACAGGC-UCGUCGUCGu-UGU---CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 14650 0.66 0.903075
Target:  5'- gACg--CCGGcGCcGCGGCGucgguccgacucGCGGCGGCg -3'
miRNA:   3'- -UGacaGGCU-CGuCGUCGU------------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 16824 0.79 0.244394
Target:  5'- cGCcG-CCGcAGCAGCAGCAGCAGCaGCa -3'
miRNA:   3'- -UGaCaGGC-UCGUCGUCGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 16850 0.69 0.768136
Target:  5'- -------cAGCAGCAGCAGCAGCaGCa -3'
miRNA:   3'- ugacaggcUCGUCGUCGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 18681 0.7 0.700439
Target:  5'- gGCUGccgccgccgucUCCG-GCA-CGGCGGCGGCGGUc -3'
miRNA:   3'- -UGAC-----------AGGCuCGUcGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 19452 0.8 0.232966
Target:  5'- aGCgGgcaCGAGCGGCGGCGGCGGCGGg -3'
miRNA:   3'- -UGaCag-GCUCGUCGUCGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 20974 0.76 0.393197
Target:  5'- aGCUcaCCG-GCAGCGGCGGCGGCaGCg -3'
miRNA:   3'- -UGAcaGGCuCGUCGUCGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 21461 0.66 0.896735
Target:  5'- gGCgucgCCGugacGGCAaCGGUGGCAGCGGCu -3'
miRNA:   3'- -UGaca-GGC----UCGUcGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 21659 0.7 0.700439
Target:  5'- -----gCG-GCGGCGGUGGCGGCGGCg -3'
miRNA:   3'- ugacagGCuCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 21893 0.73 0.53681
Target:  5'- -gUGUCCGcggccugcgucgguGGUGGCGGCGgagacgACGGCGGCg -3'
miRNA:   3'- ugACAGGC--------------UCGUCGUCGU------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 22891 0.66 0.890168
Target:  5'- cCUGgccucCCGuugguGGaCGGCGGCGACcGCGGCc -3'
miRNA:   3'- uGACa----GGC-----UC-GUCGUCGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 23904 0.73 0.559534
Target:  5'- --gGgagCCGAguGCAGCAGCGugGGCGaGCg -3'
miRNA:   3'- ugaCa--GGCU--CGUCGUCGUugUCGC-CG- -5'
10699 3' -56.8 NC_002794.1 + 23960 0.7 0.700439
Target:  5'- cUUGgcUCCGAGcCAGCGGCGAgGcCGGCg -3'
miRNA:   3'- uGAC--AGGCUC-GUCGUCGUUgUcGCCG- -5'
10699 3' -56.8 NC_002794.1 + 23997 0.72 0.573498
Target:  5'- cGCUccGUCCGAcgggccgccgucaccGCGGCgccucGGCGACGGCGGUc -3'
miRNA:   3'- -UGA--CAGGCU---------------CGUCG-----UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 29204 0.68 0.804411
Target:  5'- --cGUCCGucCGGCGGU--CGGCGGCc -3'
miRNA:   3'- ugaCAGGCucGUCGUCGuuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 29939 0.69 0.75875
Target:  5'- cGCcGUCCGGGaAGCGGCAccuaGCAGaCGGa -3'
miRNA:   3'- -UGaCAGGCUCgUCGUCGU----UGUC-GCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.