miRNA display CGI


Results 1 - 20 of 228 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 193260 1.12 0.001817
Target:  5'- aACUGUCCGAGCAGCAGCAACAGCGGCg -3'
miRNA:   3'- -UGACAGGCUCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 116125 0.86 0.091335
Target:  5'- --aGUCCGccGCGGCGGCGGCGGCGGCg -3'
miRNA:   3'- ugaCAGGCu-CGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 70868 0.84 0.134756
Target:  5'- ---cUCCG-GCGGCGGCAGCGGCGGCu -3'
miRNA:   3'- ugacAGGCuCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 186859 0.83 0.149212
Target:  5'- cGCUG-CCGuGCAGCAGCAGCGGgcuCGGCu -3'
miRNA:   3'- -UGACaGGCuCGUCGUCGUUGUC---GCCG- -5'
10699 3' -56.8 NC_002794.1 + 119433 0.82 0.160965
Target:  5'- cGCagGUCCGA-CGGCGGCGGCGGUGGCg -3'
miRNA:   3'- -UGa-CAGGCUcGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100447 0.82 0.165065
Target:  5'- -gUGUCUGAGCGGCGGCGGCgccuucccGGUGGCg -3'
miRNA:   3'- ugACAGGCUCGUCGUCGUUG--------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 32868 0.82 0.165065
Target:  5'- aGCcGg-CGGGCGGCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGaCagGCUCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 142197 0.82 0.165065
Target:  5'- gGCaGUgCGggaAGCGGCGGCGGCAGCGGCg -3'
miRNA:   3'- -UGaCAgGC---UCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 51054 0.8 0.22199
Target:  5'- --cGUCCGAGaCGGCGGCGACGGCGa- -3'
miRNA:   3'- ugaCAGGCUC-GUCGUCGUUGUCGCcg -5'
10699 3' -56.8 NC_002794.1 + 37877 0.8 0.227422
Target:  5'- --cGUCuCGGGCGGCGGgGGCGGUGGCg -3'
miRNA:   3'- ugaCAG-GCUCGUCGUCgUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 19452 0.8 0.232966
Target:  5'- aGCgGgcaCGAGCGGCGGCGGCGGCGGg -3'
miRNA:   3'- -UGaCag-GCUCGUCGUCGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 16824 0.79 0.244394
Target:  5'- cGCcG-CCGcAGCAGCAGCAGCAGCaGCa -3'
miRNA:   3'- -UGaCaGGC-UCGUCGUCGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 82043 0.79 0.25028
Target:  5'- -----gUGGGCGGCGGCGGCGGCGGCg -3'
miRNA:   3'- ugacagGCUCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 50754 0.79 0.262405
Target:  5'- cGCUcGUCCGccccgGGCGGCGGCGACGGCGcGUc -3'
miRNA:   3'- -UGA-CAGGC-----UCGUCGUCGUUGUCGC-CG- -5'
10699 3' -56.8 NC_002794.1 + 79412 0.79 0.268644
Target:  5'- cCUGUUCGAcaagaccaaggGCccGGCGGCGGCGGCGGCg -3'
miRNA:   3'- uGACAGGCU-----------CG--UCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 95751 0.78 0.28148
Target:  5'- gGCUGguacucgCgGGGCGGCGGCcgcGACGGCGGCc -3'
miRNA:   3'- -UGACa------GgCUCGUCGUCG---UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 188870 0.78 0.301639
Target:  5'- --cGUCCGA-CAGCAGCAggaacggccaGCAGUGGCg -3'
miRNA:   3'- ugaCAGGCUcGUCGUCGU----------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 101787 0.77 0.315687
Target:  5'- cCUGUCCGAGU-GCuGCGccgcugguuggcGCAGCGGCg -3'
miRNA:   3'- uGACAGGCUCGuCGuCGU------------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 119697 0.77 0.315687
Target:  5'- gGCUG-CUGGGcCGGCGGCcacAACGGCGGCu -3'
miRNA:   3'- -UGACaGGCUC-GUCGUCG---UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 107216 0.77 0.322894
Target:  5'- gGCgccgCCGGGCGGCGcGCGACGGgGGCg -3'
miRNA:   3'- -UGaca-GGCUCGUCGU-CGUUGUCgCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.